Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2296 ATGGACTCGCGCACACAGTATAATCCTCGCACCGTCGAAGAAGTTTTCAGAGATTTCAAAGGTCGTCGTGCTGGTCTCATCAAAGCTCTCACCACTGATGTCGAAGATTTCTATAACCAATGCGATCCTGAGAAGGAGAATCTATGCCTGTACGGCTTTCCTAGTGAGCAGTGGGAAGTTAATTTACCTGCTGAAGAGGTTCCACCTGAGCTTCCTGAGCCTGTGCTCGGCATTAACTTTGCTAGGGATGGCATGCAAGATAAAGATTGGCTATCTTTGGTTGCTGTTCATAGTGATTCATGGCTAATTGCTATTGCCTACTACTTTGGAGCCAGATTTGGTTTTGACAAATCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCGTCAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGGTTTAAACCACAGTGGCAGCAAATCCAAGTCCAACTCGAAAGCGCAGCGAGCTCCAGAGCCCCAGGTGAAGCAGGCGAAGGCATTGGAACCTAAAGATGAGGAAGAAGAACTGGAGGAGGAAGATGAAGATGAACACGGAGATACTTTATGCGGTGCATGTGGTGAGAATTACGGCACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAACAAGAGAGCTCGCCCTTGA 768 0.4544 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQDKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGAAKKQVKEKSSGLNHSGSKSKSNSKAQRAPEPQVKQAKALEPKDEEEELEEEDEDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2296 255 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Tpr5g2296 255 CDD PHD_AL_plant 200 250 IPR044104 -
Tpr5g2296 255 SMART PHD_3 200 248 IPR001965 -
Tpr5g2296 255 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Tpr5g2296 255 MobiDBLite consensus disorder prediction 183 197 - -
Tpr5g2296 255 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 255 - -
Tpr5g2296 255 MobiDBLite consensus disorder prediction 145 197 - -
Tpr5g2296 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Tpr5g2296 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Tpr5g2296 255 PANTHER CPG BINDING PROTEIN 6 255 IPR045104 GO:0006355|GO:0042393
Tpr5g2296 255 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Tpr5g2296 255 Pfam PHD-finger 201 249 IPR019787 -
Tpr5g2296 255 MobiDBLite consensus disorder prediction 150 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2296 Tpr-Chr5 44043831 44049058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2296 7 254 Alfin-like Transcription Factor Family AT3G42790 72.581 3.63e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tpr5g2296 Alfin 8.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2296 - - gmx:100170700 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2296 5 44043831 44049058 Tpr7g4804 7 56079928 56083093 ECH
Tpr5g2296 5 44043831 44049058 Tpr5g2296 5 44043831 44049058 ECH
Tpr7g4804 7 56079928 56083093 Tpr5g2296 5 44043831 44049058 PCT