Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2295 TTTCAAGACCAAGATTCTTCTTCTACTCAATCAACTGGTCAGTCTTATATGGAAGTCGGTTCGAGACAATCAGGTCCAATTTCTGTCAAGTATAGCAATTCTTCTGCTTGTTCAACACTTAGCGAAACTGCAGAGGGTCGCGATTTTATATTGCATCCGTCTCAACAGAATCACAACCGATCACATGAAAGTATGTATGTGTTTGTTCTTGGTGGAAATAAGATAGCTATTTATCATGCTCAGCTAGTAGGAATGGCTCCGGTTCGAATTCCTCTGCCTCTTGATCTTCATGAGGAGCCAATATATGTGAATCCGAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGCGCAAATCTAGAAGCACAGAACAAACTCATAAAAAATCGGAAACCGTATCTACATGAGTCACGCCATTTGCACGCATTGAAGAGAGCTAGAGGTTCCGGTGGATGTTTTCTAAATACCAAAAAGCTCCAAGATCATGGTCTTAATATTTCCGCTGCTACTTGGCTGAATCCGAGCGGAGATGTGCCGAAATTAAAGGTACATCAAGTAGAAACCTATAGAGACGGTGCTTCCACAACCACTTGTTCTGATGTCACGAGTGCTTCTAGTAGTGATGACATGTTCCAACAACACGAATCCGAATTCAAATCATGTGATTACCCTTCTCATATGCAAGGTTTCTTAACCGATACCGGTGGTGGTGGTGGAAATCAACGCCATATGTCGGTCATTATGTGA 750 0.4213 FQDQDSSSTQSTGQSYMEVGSRQSGPISVKYSNSSACSTLSETAEGRDFILHPSQQNHNRSHESMYVFVLGGNKIAIYHAQLVGMAPVRIPLPLDLHEEPIYVNPKQYHAIMRRRQYRANLEAQNKLIKNRKPYLHESRHLHALKRARGSGGCFLNTKKLQDHGLNISAATWLNPSGDVPKLKVHQVETYRDGASTTTCSDVTSASSSDDMFQQHESEFKSCDYPSHMQGFLTDTGGGGGNQRHMSVIM* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2295 249 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 243 IPR001289 GO:0003700|GO:0006355
Tpr5g2295 249 PRINTS CCAAT-binding transcription factor subunit B signature 100 122 IPR001289 GO:0003700|GO:0006355
Tpr5g2295 249 PRINTS CCAAT-binding transcription factor subunit B signature 131 154 IPR001289 GO:0003700|GO:0006355
Tpr5g2295 249 PANTHER HAP2 SUBUNIT OF HAP COMPLEX 8 243 - -
Tpr5g2295 249 MobiDBLite consensus disorder prediction 1 27 - -
Tpr5g2295 249 Gene3D - 97 158 - -
Tpr5g2295 249 ProSiteProfiles NF-YA/HAP2 family profile. 97 157 IPR001289 GO:0003700|GO:0006355
Tpr5g2295 249 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 99 154 IPR001289 GO:0003700|GO:0006355
Tpr5g2295 249 SMART cbf3 96 157 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2295 Tpr-Chr5 44040035 44041839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2295 1 247 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.369 1.73e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tpr5g2295 CBFB_NFYA 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2295 K08064 - gmx:100500765 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2295 5 44040035 44041839 Tpr5g2295 5 44040035 44041839 ECH
Tpr7g4803 7 56074808 56078614 Tpr5g2295 5 44040035 44041839 PCT