Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2285 ATGGAAAAGGAATCTATGAAAAAGTGTTGGAGAAAAGAAGTAGATGAAAATCTTCAAAGATTACACTCTCTCTTGTTCGGCGTTGAACGTGCCCTAGATCAACAGAATTGCGATTTCTCTACCGGTTATATTCTCTCTCTTCGTCTCATCGGTTTCATTGATTCTCGCTCTCAATCAGAAATCGATCAAGCTTTTCTTCAACAGACTCGTCGTCAAGCTTTAACCTATCTTCATACTGCTAAACAATCTCTCACTCCCCTCATTGATCGCCAAGCTTTTGAGCAAGTAAAGAGGTCTCCAGGACCCATTTTTAGGTCAACAGGAGATATTGACATTGACAAGATACGGAATTCTAAATACTTTCAAGCTCTTCTTAAGCCATCTAAAGAAAAAGATTGCAATCAATTGGTTGATCAACTGGGGAAGCAAAACAATACAGGCAAAGAAGCATCAAAGGAAGTGGTGCAAACAAAGTTAACATCAATATATGGGAAAAACAGCTTGAGGACTAGTAATGGTTCCAAAAGTTTTTTTAACTTGAAAAATAACAATTCTGAGGACTGTATAATTATTGGAAGGCCTCAATCACATGGCATCCATACAAAGAGTCCTGGTGTCTCTTCTGTTTTTGAAGTCGAAGGAGAAGGAAGAGCTCGTGGAAACACGTTTCCGACAAAACGTGCACACGTGGAAAATACTAGCCCCAGAGTTGGTTATGTCAAGTCACCTTCAATCAATGAGGAAGTTAATCCTGATGTTGCTGGCAATGGGTTTGTTACTGCCAGAGCAAAGTTGGAAATGGATGTAAAGCAAAAGCAGGGTGCAATTGGTTCACCCAGTGCACCTGTCTCACCACAATGCGACAACAATCCTGCCAACAGGCTATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCATCCGTGGTAATTTTGTCCCCCCTATTAAATCCAACGGGAGCAATACTGGAAATATGACTTCCCGAATTGCTGGCAACAAAAGTGGTGATTCTTTAGATGAGTCTACAAAGAAATGTTTGGAAATGCTGTATGGTCCTGATGGTGAACTTCCTGAGAAACTAAGAAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAAAGATCCCAATGTCCACTGGGATGACATTGCTGGATTGGGCCATGCCAAACGTTGTGTCAGTGAGATGGTCATATTACCTCTGCAACGTCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAGAGGTTTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGGTAGGAAAAGCCATAGCTGGGGAGGCAAAGGCAACCTTCTTTTACATATCTTCAAGCTCGTTGACTAGCAAATGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCTTATCTCAGCGTAAGTCAGATGGTGAGCATGAAGCAAGCAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGTTTCGACGGTGGTAACGACCAAATTCTTCTTATAGGTGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACCAAAAGACTTTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGCACGTAGCCTTTTAGAGAAGGACGGATTATTCAACCTATCAAATGAGGAAATGGATGTTATATGCAACTTAACAGATGGTTATTCTGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGTCCCCTGAGAGAGAAAATAAGACAAGGTGTAAATATTGTAGAGTTGAAGAAGGAGGATATGAGGCCAGTAACTCTTCAGGACTTCAAAGATTCCCTACATGAGGTGAGACCTTCTGTTTCACCTGATGAACTTGGCACTTATGAGCAATGGAACAAGAAATTTGGAAGCATGTCAGTTTAG 1992 0.4177 MEKESMKKCWRKEVDENLQRLHSLLFGVERALDQQNCDFSTGYILSLRLIGFIDSRSQSEIDQAFLQQTRRQALTYLHTAKQSLTPLIDRQAFEQVKRSPGPIFRSTGDIDIDKIRNSKYFQALLKPSKEKDCNQLVDQLGKQNNTGKEASKEVVQTKLTSIYGKNSLRTSNGSKSFFNLKNNNSEDCIIIGRPQSHGIHTKSPGVSSVFEVEGEGRARGNTFPTKRAHVENTSPRVGYVKSPSINEEVNPDVAGNGFVTARAKLEMDVKQKQGAIGSPSAPVSPQCDNNPANRLYGGRSYGVSRRGIRGNFVPPIKSNGSNTGNMTSRIAGNKSGDSLDESTKKCLEMLYGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVHWDDIAGLGHAKRCVSEMVILPLQRPDLFMGCRSPGRGLLLFGPPGTGKTMVGKAIAGEAKATFFYISSSSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHEASRRLKTQFLIEMEGFDGGNDQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIARSLLEKDGLFNLSNEEMDVICNLTDGYSGSDMKNLVKDASMGPLREKIRQGVNIVELKKEDMRPVTLQDFKDSLHEVRPSVSPDELGTYEQWNKKFGSMSV* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2285 663 Pfam ATPase family associated with various cellular activities (AAA) 422 552 IPR003959 GO:0005524|GO:0016887
Tpr5g2285 663 PANTHER AAA DOMAIN-CONTAINING 94 661 - -
Tpr5g2285 663 Pfam Vps4 C terminal oligomerisation domain 624 659 IPR015415 -
Tpr5g2285 663 Pfam AAA+ lid domain 584 614 IPR041569 -
Tpr5g2285 663 ProSitePatterns AAA-protein family signature. 524 543 IPR003960 GO:0005524|GO:0016887
Tpr5g2285 663 Gene3D - 381 655 IPR027417 -
Tpr5g2285 663 PANTHER FIDGETIN-LIKE PROTEIN 1 94 661 - -
Tpr5g2285 663 CDD AAA 415 552 - -
Tpr5g2285 663 Gene3D - 553 639 - -
Tpr5g2285 663 SMART AAA_5 418 554 IPR003593 -
Tpr5g2285 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 658 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2285 Tpr-Chr5 43882292 43888587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2285 336 658 Calmodulin-binding Proteins AT3G56690 30.330 4.54e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2285 K22766 - gmx:100776024 1025