Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2279 ATGGCTTATTCTTCACAATCTAAAGAAATGTATGTCCTCCCTGGGATTATAATCATTGGATCAATAGTAATTGCTTTTATAATTTTCAGACTCACAATGCAAGGATGGTGCGACCTTATCGATCACGAACCTACCCTTCCTACAACAGTCATATCTTATGATGAGAAATTTTCTGCTTGCATGAGTTTAGAGTCACATTCAATCACATTCATGTACAAGGAAGGTGATGCTGCAGAACAAGGCATAAACCAGACGGAATGTGTTATCTGTTTATCAGTCTTTCAAGAAGACGAAAGTGTTCGGAAGCTTCATAGTTGCAAGCATGTGTTTCATACATCTTGCATTGATAAGTGGCTTGGTTCTCATTCGGGATGTCCGCTATGTCGCTCTAAGATTGATCAAGTAACTTCGCCAAATGAATCATTGGCAAACGATCACACGATTGTGGCCATTGTTGACTCCAGAATTTGA 471 0.3928 MAYSSQSKEMYVLPGIIIIGSIVIAFIIFRLTMQGWCDLIDHEPTLPTTVISYDEKFSACMSLESHSITFMYKEGDAAEQGINQTECVICLSVFQEDESVRKLHSCKHVFHTSCIDKWLGSHSGCPLCRSKIDQVTSPNESLANDHTIVAIVDSRI* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2279 156 SUPERFAMILY RING/U-box 86 136 - -
Tpr5g2279 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 138 IPR013083 -
Tpr5g2279 156 CDD RING-H2_EL5_like 86 129 - -
Tpr5g2279 156 Pfam Ring finger domain 86 129 IPR001841 -
Tpr5g2279 156 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 39 148 - -
Tpr5g2279 156 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Tpr5g2279 156 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 39 148 IPR044675 -
Tpr5g2279 156 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2279 Tpr-Chr5 43824367 43824837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2279 67 149 C3H Transcription Factor Family AT5G17600 46.429 1.88e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2279 - - gmx:102661636 186.422