LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2275	ATGCTACCTACCATAAGGAGCTTATGTTGTTTTGTTTATCTTGTGCTTGTTTCCACATCGATTGAGTCTGAAGCAACAAAAACAGACATTAATGATTCTAACACACCTCAATCTCATATCAACCATGATGTTTTTATCAGCTTTCGAGGTTCAGACATCCGCCAAGGTTTTCTTAGCCACTTAGTTGATGCTCTTAATGAAAAAAAAATTATTGCCTTTGTGGATAATCAGATTAACAAAGGAGATGAAATAGCACAATCACTTTTTCAAGCAATTGAAACATCATTGATTTCTTTGGTTATATTCTCTAAAAACTATGCTTCTTCACGTTGGTGCTTAGATGAACTTGTTAAAATTGTTGAGTGTAGAGAGAAAATTGGACAGATTTTAGTGCCTGTTTTCTACAGAGTGGACCCCACAATTGTGAGGCATCAAAATGGAACTTATGCAAATGCATTTGCTAAACATGACAAAAGGTTCAATTTGACGACTGTGCAAGAATGGAAATCTGTTTTAAACGAATGTGCTAGCATATCCGGGTATCCTTCATCGATGTTTGCGAATGATTCTGTGCTTGTTAAAGAAATAGTTCAATATGTGGTGAGTAGGTTGGATGATATTCATAAGTACAAACCACATTCAAAAAGAGCACTTATAGGACTTGACAATCAAATTTCACATGTGAAATCATTGTTACTGGAAGATTCAAAAGATGTTCGTGCCATTGGCATTTGGGGTATGGCTGGTATTGGGAAAACAACTATTGCAGAGGAAGTATTTGACAGGCTATGTTCTGAATATAAAAGTTGTTACTTTATGGCTGATATCAGAGAAGAATGGAGGAGACATGGAAGGATGTATTTAAAGAAAAAGCTTTATTCTGCTCTATTAAGAAAAGAAGATTTGAATATTGAAAGACCACATGGATTGCCCTATGTTGTTGAGAGGAGACTTCGAGGTATGAAGGTTCTCGTTGTTCTTGACGATGTTAGTGATAAAGAGCAACTAGAAATTTTAATAGGAACACTTGAATGGTTTGGAAAAGGTAGTAGAATCATCATAACTACAAGCGATAAACAAGTACTTTCCAAAAGGGTTGATGATAATGATGTATACGAGCTTAAGCCATTGGATTTTGATGACTCTTTTCAACTTTTCATATCGACAGCCTTTGGACAAAACCATCCTAAAATGGAGTATGAAAATGATAAGTTATTAGAGAAAATGGTCAATTATGCCCAAGGTAATCCTTTAGTTCTGAAAGAACTGGGTTATTTTATTGGTGGAAAAGATAGAAAGACATGGAAAAGCGAATGTGAGAAGCTAACAAGAGAGCCGTTGCAAAATGCCCATGATGCTATTAGATTGAGTTGTAATATTTATCTCAATGGTGTTGATGAAATTGTTGAGTGTAGAAAGAAAGATAGAGAGATTTTAGAGCCTGCTGCCTACACTTTCTTCGGTGATAGGAGGGATCTATCAAGAACTAATTATGAAGATTCATTTGCTGAGATTTTAGAGCCTGCTGCCTACACTTTCTTCGGTGATGGGAGGGATCTATCAAGAACTAATTATGAAGATTCATTTGCTGAACATGACAAAAACTTCAATTTGACGACGGTGCAAGAAATAAGATTTGGGAGGCACTGTGGTGGTATCTCTAGGAATGAATTTGTGCCTGTTCATAAGCACAAATCTCACTCAGAAAGATTACTTATCAGACATGGCAATCAAATTTCACATGTGGAATCATTGTTACTAGCAGATTCAAAAGATGTTCGTGCCATTGGCATTTGGGGTATGGCTGTTATGGGGAAAAGAATTATTGCAGAGGAAGTATATAGAAGGCTATGTTCTGAATATGACAGTTGTTACTTTAAGGCTAATGTTAGAGAAGAATGGGAGAGAAATGGAAGGATGCATTTAAAGAAAGAGCTTTATTCTGCTCTATTAAGAAAAGATGATTTGAATATTGAAAGACCGCATGGATTGCCCTATTTTGTTGAGAGGAGACTTCGACATATGAAGGTTCTTGTTGTTCTTGACGATGTTAGGGATGAAGAGCAACTAGAAATTTTAATTGAAACACTTGATTGGTTTGGAAAAGGTAGTAGAATCATCATAACTTCAAGGCAAGTATTCCTCAATAAGGTTGATGATAATGATGATGGTTTTAAATTATTGTCCGTTTCAACCACAATATTGCGGATGTGGTAG	2217	0.3586	MLPTIRSLCCFVYLVLVSTSIESEATKTDINDSNTPQSHINHDVFISFRGSDIRQGFLSHLVDALNEKKIIAFVDNQINKGDEIAQSLFQAIETSLISLVIFSKNYASSRWCLDELVKIVECREKIGQILVPVFYRVDPTIVRHQNGTYANAFAKHDKRFNLTTVQEWKSVLNECASISGYPSSMFANDSVLVKEIVQYVVSRLDDIHKYKPHSKRALIGLDNQISHVKSLLLEDSKDVRAIGIWGMAGIGKTTIAEEVFDRLCSEYKSCYFMADIREEWRRHGRMYLKKKLYSALLRKEDLNIERPHGLPYVVERRLRGMKVLVVLDDVSDKEQLEILIGTLEWFGKGSRIIITTSDKQVLSKRVDDNDVYELKPLDFDDSFQLFISTAFGQNHPKMEYENDKLLEKMVNYAQGNPLVLKELGYFIGGKDRKTWKSECEKLTREPLQNAHDAIRLSCNIYLNGVDEIVECRKKDREILEPAAYTFFGDRRDLSRTNYEDSFAEILEPAAYTFFGDGRDLSRTNYEDSFAEHDKNFNLTTVQEIRFGRHCGGISRNEFVPVHKHKSHSERLLIRHGNQISHVESLLLADSKDVRAIGIWGMAVMGKRIIAEEVYRRLCSEYDSCYFKANVREEWERNGRMHLKKELYSALLRKDDLNIERPHGLPYFVERRLRHMKVLVVLDDVRDEEQLEILIETLDWFGKGSRIIITSRQVFLNKVDDNDDGFKLLSVSTTILRMW*	739

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2275	738	Pfam	NB-ARC domain	583	723	IPR002182	GO:0043531
	Tpr5g2275	738	Pfam	NB-ARC domain	224	448	IPR002182	GO:0043531
	Tpr5g2275	738	Gene3D	-	40	206	IPR035897	-
	Tpr5g2275	738	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	562	722	-	-
	Tpr5g2275	738	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	35	459	-	-
	Tpr5g2275	738	Gene3D	-	207	371	IPR027417	-
	Tpr5g2275	738	PRINTS	Disease resistance protein signature	241	256	-	-
	Tpr5g2275	738	PRINTS	Disease resistance protein signature	317	331	-	-
	Tpr5g2275	738	PRINTS	Disease resistance protein signature	413	427	-	-
	Tpr5g2275	738	SMART	till_3	41	178	IPR000157	GO:0007165
	Tpr5g2275	738	Gene3D	-	560	721	IPR027417	-
	Tpr5g2275	738	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	577	713	IPR027417	-
	Tpr5g2275	738	Pfam	TIR domain	42	211	IPR000157	GO:0007165
	Tpr5g2275	738	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	35	459	IPR044974	GO:0006952
	Tpr5g2275	738	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	562	722	IPR044974	GO:0006952
	Tpr5g2275	738	ProSiteProfiles	TIR domain profile.	40	204	IPR000157	GO:0007165
	Tpr5g2275	738	SUPERFAMILY	Toll/Interleukin receptor TIR domain	34	181	IPR035897	-
	Tpr5g2275	738	Gene3D	-	377	459	IPR042197	-
	Tpr5g2275	738	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	212	459	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2275	Tpr-Chr5	43767336	43773156	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2275	578	719	WRKY Transcription Factor Family	AT4G12020	37.931	2.98e-21	97.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2275	-		-	gmx:100802823	471.855