Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2273 ATGGACTCACGCACACATCACACTGTCGAAGAGGTCTTTCAAGATTTTAAGGGTCGCCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGCTGAAGATTTCTATAACCAATGTGATCCTGACAAGGAAAACCTGTGCTTGTACGGCTTTCCTAACGAGGAGTGGAAAGTCAATTTACCTGCTGAAGATATGCTATTGGAGCTTCCCGAGCCTTCCCTGGGCATTAACTTTGCTAGGTCCGGAATGCAAAAAACAGATTGGCTGTCCTTAGTTGCCGGTCATTGCGATTCATGGTTATTTGGCGTTGCATTCTATTATGGAGCTAAATTTCGGTTTAACAAATCTGACAGGGAGCGCCTTTTCAGTATGATCAATGAACTGCCAACAATATTGAAAGTTGTTGATGCTGCAAACGTTACTGATACTGCAAAGAAACAAGTTGAGGTGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCGAAGTCCAACTTGATAGCGCAGACAAAGGCATCAGAACCCAAAGTTGTGGAAGAGGAGCCGGAGGAGGGCGACGAAAATGTTTTCTGCAATGTATGTCATGTGCATTATGGGGAGGACACTTTCTGGATTTGCTGCGACTTCTGTGATAATTGGTATCATGGGAAGTGTGTGAATGTTACTCGTACCATTGCAGAGGAAATCGATAAATACAAATGTCCGTATTGTGGGCTGCATTTCGGTTGA 726 0.4421 MDSRTHHTVEEVFQDFKGRRAGLIKALTTDAEDFYNQCDPDKENLCLYGFPNEEWKVNLPAEDMLLELPEPSLGINFARSGMQKTDWLSLVAGHCDSWLFGVAFYYGAKFRFNKSDRERLFSMINELPTILKVVDAANVTDTAKKQVEVKSSVSNHSGSKSKSNLIAQTKASEPKVVEEEPEEGDENVFCNVCHVHYGEDTFWICCDFCDNWYHGKCVNVTRTIAEEIDKYKCPYCGLHFG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2273 241 SUPERFAMILY FYVE/PHD zinc finger 179 236 IPR011011 -
Tpr5g2273 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 237 IPR013083 -
Tpr5g2273 241 MobiDBLite consensus disorder prediction 150 170 - -
Tpr5g2273 241 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 236 - -
Tpr5g2273 241 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Tpr5g2273 241 MobiDBLite consensus disorder prediction 150 180 - -
Tpr5g2273 241 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Tpr5g2273 241 PANTHER CPG BINDING PROTEIN 6 236 IPR045104 GO:0006355|GO:0042393
Tpr5g2273 241 SMART PHD_3 189 237 IPR001965 -
Tpr5g2273 241 Pfam Alfin 8 134 IPR021998 GO:0006355|GO:0042393
Tpr5g2273 241 Pfam PHD-finger 189 236 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2273 Tpr-Chr5 43749034 43820815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2273 7 236 Alfin-like Transcription Factor Family AT3G42790 54.583 3.26e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr5g2273 Alfin 8.3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2273 - - gmx:100170700 317.005