Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2272 ATGACTTTTCTTCACCCGGCTGACAACATTAACCCAAAGCTTCAACGATGGTTGTGCAAGGCAAAAGTAAGCTTTTCAGGGAAACCTCAGTATCTGGATAAAGTGTTGCAGAATATGTTACTGTTTTTTAAATGCGGAATATTTGTCAGATATTGGACTTCTGCCTATAATCGGAAAACTACATCCATCTGGGCATTTATGGAAAGCAACAAAGAACATACTTATTTCACAGTTCGTTTGAGAAGAATATCAGGAGAAGCTATAATGGACTCGCACAAAGCGTCGAAAAGGTATAATGGTTACACCGTCGAAAAGGTCTCATCAAAGCTCGAGCTGGTCTTTGAAGATTTTAAGCGTCGTCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGCTGAAAATTTATATAACCAATGTGATCCTGACAAGGAAAACCTGTGTTTATATGGCTTTCCTAATGAGGAGTGGAAAGTCAGTTTACCTGCTGAAGATATGCCATCGGAGCTTCCCGAGCCTTCCCTAGGCATTAACTTTGCTAGGCCGGGAATGCAAAAAACAGATTGGCTTTCCTTAGTTGCCGCTCATAGCGATTCATGGTTATTTGGCGTTGCACTCTATTATGGAGGTGTATTTGAGTTTAACAAATCTGACAGGGAGCGCCTTTTCAATATGATCAATGAACTGCCAACATTATTGGAAGTTGTTACTGATGCTACAAAGAAACAAGTTGAGGTGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCCAAGTCCAACTCGATAGCGCACCAGGCTCGAGATCCACGGACTAAGAGGACGAAGGCATTGAAACCCAAAGTTGTGGAAGTGCAAATCGAGGAGGACGACGAGAATATATTATGCAATATATGTTTCATGCATCATGGCGTGGACTCTTTCTGGATTTTCTGCGACTACTGTGATCATTGGTTTCATGGGAAGTGTGTGAAGGTTACGGCTTCCATTGCTGCGGAAATAAATAAATACAAGTGTCCATTCTGTCGGGTGCAATTCAAGTGA 1041 0.4207 MTFLHPADNINPKLQRWLCKAKVSFSGKPQYLDKVLQNMLLFFKCGIFVRYWTSAYNRKTTSIWAFMESNKEHTYFTVRLRRISGEAIMDSHKASKRYNGYTVEKVSSKLELVFEDFKRRRAGLIKALTTDAENLYNQCDPDKENLCLYGFPNEEWKVSLPAEDMPSELPEPSLGINFARPGMQKTDWLSLVAAHSDSWLFGVALYYGGVFEFNKSDRERLFNMINELPTLLEVVTDATKKQVEVKSSVSNHSGSKSKSNSIAHQARDPRTKRTKALKPKVVEVQIEEDDENILCNICFMHHGVDSFWIFCDYCDHWFHGKCVKVTASIAAEINKYKCPFCRVQFK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2272 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 342 IPR013083 -
Tpr5g2272 346 Pfam Alfin 111 236 IPR021998 GO:0006355|GO:0042393
Tpr5g2272 346 Pfam PHD-finger 295 343 IPR019787 -
Tpr5g2272 346 PANTHER CPG BINDING PROTEIN 107 342 IPR045104 GO:0006355|GO:0042393
Tpr5g2272 346 MobiDBLite consensus disorder prediction 245 262 - -
Tpr5g2272 346 SUPERFAMILY FYVE/PHD zinc finger 270 344 IPR011011 -
Tpr5g2272 346 ProSitePatterns Zinc finger PHD-type signature. 295 341 IPR019786 -
Tpr5g2272 346 MobiDBLite consensus disorder prediction 245 274 - -
Tpr5g2272 346 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 107 342 - -
Tpr5g2272 346 SMART PHD_3 294 342 IPR001965 -
Tpr5g2272 346 ProSiteProfiles Zinc finger PHD-type profile. 292 344 IPR019787 -
Tpr5g2272 346 ProSiteProfiles Zinc finger RING-type profile. 295 342 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2272 Tpr-Chr5 43747062 43754188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2272 98 341 Alfin-like Transcription Factor Family AT3G42790 54.435 4.15e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr5g2272 Alfin 1.1e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2272 - - gmx:100170700 310.457