LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2271	ATGAAAAATAGTGAATCCAGTAGTAGCATAAGTTTATTTGTTTATCTCACTCTCTTGCTTATTTCAAAACCATGGGGAGTAGCTGCAAGCATAATTCCAAATCCAATTTCAAACAAGCATTACTATTCTGCATATCCTGTGATATTTTCACCTTCCAGCCCTGTTCCTGAAATAAAATATGATGTCTTTGTTAGCTTTAGGGGTGCTGATATTCGCAAGAATTTCCTTAGTCATGTCCTCGAGGCTTTAGCACGAAAGCAAATTGTTGTCTTTTCGGACAAGAAGCTTAAAGGAGGAGATGAAATATCAGAACTTCATAGAGCAATTGAAAAATCATTCATTTCATTGGTCATATTTTCCCCAAACTTTGCATCTTCACATTGGTGTTTAGACGAGGTTGTGAAAATAGTCGAGTGGAGAGAAAAATATGGTAGGATACTGATTCCGGTATTCTACCAAGTAGATCCCTCAGATGTACGGCATCAAAATGGGACTTATAGAGATGTTTTTGCTCAACATGAAAAAAACTATGATATGAACAAGGTCCTAAGCTGGAGATCTGCTTTGAAGCAATCTGCCAATATGTCTGGATTTGATTCATCACATGTTTCGGATGATGCTAAGCTTGTTGAAGAAATAGTTCAAAATGTGTTGACAAAGTTGAATCAAGTGGACCAAGGCAAGTCAAAAGGACTTGTAGGAATTGAAAAGCAAATTTCACCTATAGAATCCTTGTTACATTTAGAGTTGGAAGATGTTCGTGTTCTTGGAATTTGGGGTATGCCCGGTATTGGTAAAACAACTATTACTGAAGAAGTATTTCGTAGACTACATTCTAAATACGAAAGTTATTGTTTTATGGCTAATGTAAGAGAAGAATCAGAAAGATATGGCACAAACAATTTGAGGTTAAGAAACAAGCTTTTATCCACTCTATTAAAGGAAGAAAATTTGAAAGATGACCTGATTAATGGATTACCTTCTTGGGTTAAGAAAAGGCTTAGCCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAAAGATGCAGAGCAACTAGAAGTTTTGATTGGAACAGATGATTGGTTAGGACCAGGAAGTAGAATCATCATAACTACTAGAGATAAGCAAGTACTAGCTGGAAAAGTTGATGATATATATGAGGTTGAGCCATTGGACTCTGCTGAATCTTTTCAACTTTTCAATCTGCATGCTTTTACTAAACATGAGGATCTTGAAATGGAGTACTATAAGCTATCAGAGAAGATGGTAGATTATACCAAAGGTGTCCCACTAGTTCTTAAAGCTTTAGCTAACCTTCTTTGTGGGAAAGATAAAGACATATGGGAAAGCCAAGCAAGGATTTTGAAAATAGAGCAGATTGAAAATGTCCATGATGTTTTCAGATTGATATACACTAATCTTGATTATCATGAAAAGAATATATTCTTGGATATTGCCTGCTTTTTTGACGGATTGAAATTGAATCTTGACCTCATAAAACTTCTATTAAAAGATCGTCGTTATTCCGTGAGCACTAAATTAGACAGGCTGAAAGATAAAGCTCTTGTAACTATTTCTCAACAGAGCATTGTATCAATGCATGACATTATACAAGAAACCGCTTGGGATATTGTACGACAAGAGTCTGTTGAAGAACCTGGAAGCCGAAGCCGACTATTTGAGCCTGATGACATTTATCATGTATTGAAAGATGACAAGGGAAGTGAGGCCATCAGAAGTATGGCCATTAGATTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCCAAGATGAGCAAGTTGAAATTTTTGGATATTTACACTAAGGGGTCTCCAAATGAAGGTAGTCTGTGTCTTCCTCAAGGGCTTGAATTCTTGCCTAATGAACTGAGATATCTTCGTTGGGAGTATTACCCTTTGGAATCCTTGCCATCCAAATTTTCTGCAGAAAACCTTGTTACATTGAGCTTGCCTTATAGCCGATTGAAAAAACTTTGGCATGGAGTGAAGGATCTTGTGAATTTGAATGTCCTGATACTCCATTCATCAACACTCCTAACAGAGCTACCAGACTTTTCAAAGGCCACAAGTCTTGCAGTAATGGACCTCCAATTCTGTCCAGGGTTGACTAGTGTCCATCCATCTATTTTCTCTCTCAAAAATCTTAAGAAACTGGATCTGAGTGGATGCATTTCCCTTACAAGACTTCAAAGCAATAATAACCATTTAAGTTCCCTTAGTCATCTCTCCCTCTACAACTGCACATCACTGAAGGAATTCTCAGTGACCTCAAAGAATATGAACGAACTGAATTTAGAACTCACAAGTATCAAAGAACTACCCTCATCAATTGGACTTCAAACCAAACTTGAAAAGTTACTTCTAGGACACACTCACATTGAGAGCTTGCCTAGGAGCATCAAGAATCTTACAAGGTTGAAACAACTAGGCTTGCATCATTGCAGAGAGCTTCAAACTCTACCGGAGCTTCCTCTATCGCTAGAAATACTAGATGCTATTGGTTGTGTATCACTGGAGAATGTAGTGTTTGGTTCAACTGCTAGTGAACAACTTAAGGAAAAGAGGAAAAGGGTTATCTTCTGGAATTGCCTTAAACTAAATGAGCCTTCTCTCAAGGCTATTGGGTTGAATGCTCAAATTAACATGATGAGCTTTTCACACAAACATATATCCACATGCGATCATAATCGTGATCGTCATCATGATCATGATCACGATCTTAATCAACGCATGTACGTGTACCCAGGTAGCAAAATTCCAGAGTGGTTGGAATATAGTACAACTACACATGATTTCATAACTATTGATCTTTCTTCTGCTCCTTATTTCTCTAGGTTAGGCTTCATTTTTGGCTTCATCATTCCAACCATCTCATCAGAGGGTTCAATTCTTAAATTCAAAATTAGTGATTGCAATGGCTTCATCATTCCAACCATCTCATCAAAGGGTTCAATTCTTAAATTAAAAATCAATGACTGTGATGGTGAAGATGAAGGTATTAAAGTGTACTTGAACAGACCACATCACGGAATTGAATCGGATCATGTGTATCTAATGTATGACCCAAGATTGTCTCATTACCTAGCTAGCCGAGTCAATGATTGGTCAATGATTAAAATTCAGGTTAGAGCATCATCAAGAACACCGACATCACAGTACATGCCAGTGCAGTTAAGAGGATTTGGTGTTAGCCTAGTAACCCCTTCACTATATGACAAGTTTAAACAGCAATTGGAATTTGGTGATGATAGTGTTGTTCCGGATAATACATGTCCAGTGGAAGAGAGATCGATATTGCAGGCTTTGAATTTGCTAAAGTAA	3351	0.3739	MKNSESSSSISLFVYLTLLLISKPWGVAASIIPNPISNKHYYSAYPVIFSPSSPVPEIKYDVFVSFRGADIRKNFLSHVLEALARKQIVVFSDKKLKGGDEISELHRAIEKSFISLVIFSPNFASSHWCLDEVVKIVEWREKYGRILIPVFYQVDPSDVRHQNGTYRDVFAQHEKNYDMNKVLSWRSALKQSANMSGFDSSHVSDDAKLVEEIVQNVLTKLNQVDQGKSKGLVGIEKQISPIESLLHLELEDVRVLGIWGMPGIGKTTITEEVFRRLHSKYESYCFMANVREESERYGTNNLRLRNKLLSTLLKEENLKDDLINGLPSWVKKRLSRMKVLIVLDDVKDAEQLEVLIGTDDWLGPGSRIIITTRDKQVLAGKVDDIYEVEPLDSAESFQLFNLHAFTKHEDLEMEYYKLSEKMVDYTKGVPLVLKALANLLCGKDKDIWESQARILKIEQIENVHDVFRLIYTNLDYHEKNIFLDIACFFDGLKLNLDLIKLLLKDRRYSVSTKLDRLKDKALVTISQQSIVSMHDIIQETAWDIVRQESVEEPGSRSRLFEPDDIYHVLKDDKGSEAIRSMAIRLSEIKELQLSPQVFAKMSKLKFLDIYTKGSPNEGSLCLPQGLEFLPNELRYLRWEYYPLESLPSKFSAENLVTLSLPYSRLKKLWHGVKDLVNLNVLILHSSTLLTELPDFSKATSLAVMDLQFCPGLTSVHPSIFSLKNLKKLDLSGCISLTRLQSNNNHLSSLSHLSLYNCTSLKEFSVTSKNMNELNLELTSIKELPSSIGLQTKLEKLLLGHTHIESLPRSIKNLTRLKQLGLHHCRELQTLPELPLSLEILDAIGCVSLENVVFGSTASEQLKEKRKRVIFWNCLKLNEPSLKAIGLNAQINMMSFSHKHISTCDHNRDRHHDHDHDLNQRMYVYPGSKIPEWLEYSTTTHDFITIDLSSAPYFSRLGFIFGFIIPTISSEGSILKFKISDCNGFIIPTISSKGSILKLKINDCDGEDEGIKVYLNRPHHGIESDHVYLMYDPRLSHYLASRVNDWSMIKIQVRASSRTPTSQYMPVQLRGFGVSLVTPSLYDKFKQQLEFGDDSVVPDNTCPVEERSILQALNLLK*	1117

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2271	1116	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	230	485	IPR027417	-
	Tpr5g2271	1116	Pfam	Leucine Rich Repeat	654	673	IPR011713	-
	Tpr5g2271	1116	Pfam	TIR domain	59	233	IPR000157	GO:0007165
	Tpr5g2271	1116	SUPERFAMILY	Toll/Interleukin receptor TIR domain	50	198	IPR035897	-
	Tpr5g2271	1116	Gene3D	Ribonuclease Inhibitor	568	768	IPR032675	-
	Tpr5g2271	1116	Gene3D	-	391	475	IPR042197	-
	Tpr5g2271	1116	Gene3D	-	219	384	IPR027417	-
	Tpr5g2271	1116	ProSiteProfiles	TIR domain profile.	58	221	IPR000157	GO:0007165
	Tpr5g2271	1116	Gene3D	Ribonuclease Inhibitor	769	920	IPR032675	-
	Tpr5g2271	1116	Pfam	NB-ARC domain	250	461	IPR002182	GO:0043531
	Tpr5g2271	1116	SMART	till_3	59	195	IPR000157	GO:0007165
	Tpr5g2271	1116	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	55	1107	IPR044974	GO:0006952
	Tpr5g2271	1116	Gene3D	-	57	218	IPR035897	-
	Tpr5g2271	1116	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	55	1107	-	-
	Tpr5g2271	1116	SUPERFAMILY	L domain-like	533	863	-	-
	Tpr5g2271	1116	PRINTS	Disease resistance protein signature	255	270	-	-
	Tpr5g2271	1116	PRINTS	Disease resistance protein signature	333	347	-	-
	Tpr5g2271	1116	PRINTS	Disease resistance protein signature	426	440	-	-
	Tpr5g2271	1116	PRINTS	Disease resistance protein signature	720	736	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2271	Tpr-Chr5	43738955	43745961	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2271	60	840	WRKY Transcription Factor Family	AT4G12020	35.687	4.52e-123	414

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2271	-		-	mtr:MTR_8g020360	1674.06