Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2270 ATGGAAACAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGAGAGTGGAGTTGATAGAAGCAATTCTGCTTTGTTCTCACCTAAGCAGATTTCCAACCCAGTTGTATACAAACTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAAAGTTTGGAATGCATATCAATTGAAAGATCATCTTCTGGAAAGCTTCGATTGGAGTGCTCAGAAGGTACTTCAGAGGCAGATTTGGGGAAGCTAAATGCCAAGTTTCAGATACTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCCCGATCACCTGTTCATTCCCATGTACAAATAGATAGCCAGTGTTCTGCTGATAATCCTGTCATAATCGAGAAGGTTCAGTCCAAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCAATCTGGTAGTATTGATCAGTGTTCCCGACCTTCTGAAGGAGTGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGATTTTTCCATGACAGATGGAGAAATATGTTTGGACAAGTTGTCGGTCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACCAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAAGAAAATGACTAGAAAATGTGAAGCAGAATCTTCTGGAAATGTGAGTGCTGCACCTGTAATCTCTGTGGAAAATATGGCTGGAGAAGGGGATGTCAAGTATAAAGATTCATGTGTAGTGGAGGATTGCAGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAAACTCTTAATACTGAACATGAATTAGGGGATGAGGATCAGCAGAGTGAAGAGAGAGCTGCGAAAAGAATGCGTAAGCCTACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGTCATCAAGTTCTAATAAAAATACGGGACACATACATGTTTCTCCAACTTCTAATAAAAATACGGGACACAGACATGTTTCTCCAACTTCTCAGGTCAGGCCTGCTACGAATGCTTTACCAGAGGCAAGAACATTTGTCACCAGGTTAGACTCTCTTGGAGGTTATGGTGTTCAAATTCCTTGTGTTTCTCGGGTTCGTAGAAGTCGTCCAAGGAAAACTATCACGTCTCTTATGAAATTTCATCCAACTGGCATGGTTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGATCATGGTTCTGAAGCTGATAGTGTGATTCAGGACAAAATCTCAAAGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCAGTGAGACCAACTGAGTCTGCTAGTGATAGAATGTCTAAGTCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAACTGTCACAACTGAACCAAGGCAGGAATCAAAGCCAAAAAAGACAGATACATCTAGCTGCACTGAAGAGCGCAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGTTGAAGTAATGAAATTGATCGAAGGTGTGTCACGGTGTGGACCAGGGAGATGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGACAAATGGAGGAATTTGCTCAAAGCTAGCTTTGCACCGACACCTGCAGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCTGAGCCAATTTTAGTACGCGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTTCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAGTGGAGACAGATTGGGGTACTTGTAG 2040 0.423 METVIGIEDNDDGKLEESGVDRSNSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGTSEADLGKLNAKFQILQKVKQEEKLRLSSRSPVHSHVQIDSQCSADNPVIIEKVQSKTPYQEAPSIASSLNYSHSNQSGSIDQCSRPSEGVIESGSSASAVNSALTHDFSMTDGEICLDKLSVKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDKKMTRKCEAESSGNVSAAPVISVENMAGEGDVKYKDSCVVEDCRVDDNQVASETRLETLNTEHELGDEDQQSEERAAKRMRKPTKRYIEELSENESREYNPRSSSSNKNTGHIHVSPTSNKNTGHRHVSPTSQVRPATNALPEARTFVTRLDSLGGYGVQIPCVSRVRRSRPRKTITSLMKFHPTGMVEAAKLGNKVVRDHGSEADSVIQDKISKPSSMPVKIHQPVRPTESASDRMSKSTSESGKEKQCPVTVTTEPRQESKPKKTDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNFSSSKLTTTGGTVSGDRLGYL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2270 679 SMART sant 563 616 IPR001005 -
Tpr5g2270 679 MobiDBLite consensus disorder prediction 325 368 - -
Tpr5g2270 679 Pfam Myb-like DNA-binding domain 566 614 IPR001005 -
Tpr5g2270 679 MobiDBLite consensus disorder prediction 485 545 - -
Tpr5g2270 679 CDD SANT_TRF 565 615 - -
Tpr5g2270 679 MobiDBLite consensus disorder prediction 369 408 - -
Tpr5g2270 679 MobiDBLite consensus disorder prediction 502 529 - -
Tpr5g2270 679 SUPERFAMILY Homeodomain-like 561 621 IPR009057 -
Tpr5g2270 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 559 618 IPR017930 -
Tpr5g2270 679 ProSiteProfiles Myb-like domain profile. 567 614 IPR001005 -
Tpr5g2270 679 MobiDBLite consensus disorder prediction 325 408 - -
Tpr5g2270 679 PANTHER TRF-LIKE 3 1 678 - -
Tpr5g2270 679 Gene3D - 554 660 - -
Tpr5g2270 679 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2270 Tpr-Chr5 43729557 43735809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2270 567 613 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 3.56e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g2270 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2270 - - mtr:MTR_8g020330 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2270 5 43729557 43735809 Tpr5g2270 5 43729557 43735809 ECH