LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2268	ATGCACAAAATAGAATGGATATTAATATGGTTATCTTTTATTTGTCTCTTCTGGTTTATGCCAAAATCAGTAGTTGAAAATCATCCAAACAACAATGTTCCTGAAATTCATCATCATCATAAGTATGATGTCTTTGTTAACTTTCGTGGTTCAGACATCCGCAAAGGTTTTCTTGCTCATTTGATTAAAGCTTTATCTGAAAAGAAAATTGTTACTTTTGTAGATGATAAACTTAAAAGAGGAGATGAAATATCAGCACTTTATGATGCAATTGAAAAATCATTGATATCTTTGGTTATATTCTCTCAAAATTATACTAGTTCAGCTTGGTGTTTGGATGAGTTAGTCAAAATTGTTGAATGTAGAGAAAAAAATGGACAGATTTTATTGCCTGTTTTCTATAAAGTGGACCCTACTAATGTGAGGAATCAAAATGGAAGTTATGGTAATATTGCTGTTGCTGAACAAGAAAAATGGTTCGATTCGAGTAGGGTGGCAAAATGGAAATCTGCTTTGAAAAAATCGGCTGATATTAGTGGGTTTCCTTCCTCTGATTTTTCGAATGATGCTAAGCTTATTGAAGAAATAGTTAAAGTTGTGTTGAAGAGGTTGGATCATGGGCGTCTAGTTAATTCAAAAGGAATTGTTGGAATTGGAAAACAAATTTCAAATGTGGAATCATTGTTACAATTAGAGTCACAAGATGTTCGTGCTATTGGAATTTGGGGGATGAGTGGTATAGGTAAAACAACTATTGCAGAAGAAGTATATAGCAAGCTATGTTCCGAGTATGACGGTTGTTACTCGATGACTGATGTTCGAGAAGAATGTAGAAAAAATGGAATAATGTCTTTAAAGAAAGAGATTTATTCTACTCTATTAAAGCAACAAGATTTGGATATCGACACACGAAGTGGATTACCTTCTTCTGTTGTGAGGATGCTTCGTCGTATGAAGGTTCTTGTTGTTCTTGATGGTGTCAATGATCTACAACAACTAAATTATTTAATTGGATCGACGACACTTGATTGGTTTGGAAATGGTAGTAGAATAATCATAACAAGTGGAGATAAGCAAGTACTTGTCGAAAGAGGGGTTGATATATATGAGGTTAAGGCATTAGACTTTGATGACTCTCTTATGCTTTTCAATATGTATGCCTTTGAACAAAATCATGCATATCAGGAAGAGTACTATGAGTTGTCGAAGATGATGGTCAAGCATGCCGCAGGAATTCCACCTGCTCTTGAACATTTGGGTCGTCGGCTTCGTGGAAAAGATATAGAAGCATGGGAAAAGCAGTTAGGGAGGCTTAAAAAAAGAGTTCCAATTAAAAAAGTTCATGAAATTTTTAAATTGAGTTACAATGATCTTGATCGTCACGAGCAGAAGATACTATTAGACATTGCATGTTTTTTTGATGGATTGAATCTCAAAAATGACGACATACAACTGTTGGTAAAAGATCGTGATTATTCATTGGCTGATGAGCTCGATAGTTTGATAAATAAAGCTCTTATAACCATTTCTCCAGATAATGTTGTATCCATGCTAAACATTATACAACAAACAGCTTTGGAAATTGTTCGCGAAGAATCCAATGACGACCCTGGAAAACAAAGCCGACTACAGGATCCTGATGATATTTATTATGTGCTGAAAAATAACAAGGGGAGTGAGGCTATTAGAAGCTTAGCTATCGATGTGTCGATAATTAAGGAGTTGCAGTTACATCCAAAGGTGTTTGCAAAAATGAACAAACTACGATATTTGGATATTTATAGTAACGGGTACTCTTATGATTTTGTTCGAAGTCGAGGGGGCTTGAATCTTTCTCAAGGTCTTGAATATTTGCCAAATGAACTCAGATACCTTCGTTGGGCACGTTTCCCTTTGGAGTCCTTACCATGCACTTTTTCGGGTGAAAAACTTGTCGTATTGGACTTGCAGTACAGCCGTGTGAGAAAACTTTGGCACGATGATCATAAGGATCTTGCAAATTTAAAATACCTTAAACTCGGCTCATCGTCAGACTTGTTGGAGCTACCAGACTTGTCAAATGCTAAAAATCTTGAAGTAGTTGATCTTCGCCTTTGTACCGGGTTGACTAGTGTACATCCATCTGTCTTTACTCTCAATAAGCTTGAGAAATTGGACCTAGGTGGATGTTTTTCCCTCAGAAGCTTTCGAAGCAATATCCGTTTCAGCTCCCTTCGTTATCTCTCGCTTGCTGGTTGCACTGCACTAAAGGAGTTCTCAGTAACCTCAAAGGAAATGGTAAACTTGAATTTAGAACTATCGGGTATCAAACAACTGCCATCAGCAATTGGACTTCAAACCAAACTTGAAAAGTTGCTTCTTGCACACAGTTACATTGAGAACTTGCCTAAAAGCATCAAGCATCTTCCAAGGCTTAGACATCTAGACTTGCGACATTGTAGGAAGCTTCGAAGTCTACCAAAACTTCCTTCATCGTTGATAACTCTAAATGCCAGTGACTGTGTATCATTGGAGAATGTAACTTTCCCTTCAACTGATGTTCAAATGTTAAAGGAAAACAAAACAAGAGTGTCATTCTGGAATTGCTTGAAACTGGATCAACATTCTCTCAGGGCAATAGGATTGAATGCACAAATTAACATTAAGAAATTTGCACATCAGCATATATCCATATCCCTTGATCACGATCATGATGCTCAAGGCACCTACGTGTACCCGGGAAGCAGTGTTCCAGAATGGTTGGTGTATAGGACAACACATGATTACATGACTATTGATCTCTCTTTTGTGAATCATTCGTCTCCATTGGCCTTCATTTTATGCTTCATTGTTCCACAAGTTGAATCACCAGGTTTCATTTTGAGATTTAATATTGGTATTGATGAAGGTGAAGATATCCAATTGTACTTGGACAGGCCAAGTCGAGAAATTAAATCAGATCACGTGTATTTAATATCTGATCGAGGTTTTTCTCGCTATCTCAATAACCAAGTCAAAGATCAGCCAAAGTTCAAAATTAAGGTTACAGCAGAATCACACACACTAACATCAGATTATGTGTCATTAATAATGTTGAGAGGATTTGGGGTCAGCCCAATAAACACCTCATAA	3111	0.3671	MHKIEWILIWLSFICLFWFMPKSVVENHPNNNVPEIHHHHKYDVFVNFRGSDIRKGFLAHLIKALSEKKIVTFVDDKLKRGDEISALYDAIEKSLISLVIFSQNYTSSAWCLDELVKIVECREKNGQILLPVFYKVDPTNVRNQNGSYGNIAVAEQEKWFDSSRVAKWKSALKKSADISGFPSSDFSNDAKLIEEIVKVVLKRLDHGRLVNSKGIVGIGKQISNVESLLQLESQDVRAIGIWGMSGIGKTTIAEEVYSKLCSEYDGCYSMTDVREECRKNGIMSLKKEIYSTLLKQQDLDIDTRSGLPSSVVRMLRRMKVLVVLDGVNDLQQLNYLIGSTTLDWFGNGSRIIITSGDKQVLVERGVDIYEVKALDFDDSLMLFNMYAFEQNHAYQEEYYELSKMMVKHAAGIPPALEHLGRRLRGKDIEAWEKQLGRLKKRVPIKKVHEIFKLSYNDLDRHEQKILLDIACFFDGLNLKNDDIQLLVKDRDYSLADELDSLINKALITISPDNVVSMLNIIQQTALEIVREESNDDPGKQSRLQDPDDIYYVLKNNKGSEAIRSLAIDVSIIKELQLHPKVFAKMNKLRYLDIYSNGYSYDFVRSRGGLNLSQGLEYLPNELRYLRWARFPLESLPCTFSGEKLVVLDLQYSRVRKLWHDDHKDLANLKYLKLGSSSDLLELPDLSNAKNLEVVDLRLCTGLTSVHPSVFTLNKLEKLDLGGCFSLRSFRSNIRFSSLRYLSLAGCTALKEFSVTSKEMVNLNLELSGIKQLPSAIGLQTKLEKLLLAHSYIENLPKSIKHLPRLRHLDLRHCRKLRSLPKLPSSLITLNASDCVSLENVTFPSTDVQMLKENKTRVSFWNCLKLDQHSLRAIGLNAQINIKKFAHQHISISLDHDHDAQGTYVYPGSSVPEWLVYRTTHDYMTIDLSFVNHSSPLAFILCFIVPQVESPGFILRFNIGIDEGEDIQLYLDRPSREIKSDHVYLISDRGFSRYLNNQVKDQPKFKIKVTAESHTLTSDYVSLIMLRGFGVSPINTS*	1037

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2268	1036	Pfam	TIR domain	41	206	IPR000157	GO:0007165
	Tpr5g2268	1036	Gene3D	Ribonuclease Inhibitor	553	756	IPR032675	-
	Tpr5g2268	1036	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	30	1036	-	-
	Tpr5g2268	1036	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	30	1036	IPR044974	GO:0006952
	Tpr5g2268	1036	Gene3D	Ribonuclease Inhibitor	757	886	IPR032675	-
	Tpr5g2268	1036	PRINTS	Disease resistance protein signature	238	253	-	-
	Tpr5g2268	1036	PRINTS	Disease resistance protein signature	314	328	-	-
	Tpr5g2268	1036	PRINTS	Disease resistance protein signature	409	423	-	-
	Tpr5g2268	1036	PRINTS	Disease resistance protein signature	800	816	-	-
	Tpr5g2268	1036	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	203	469	IPR027417	-
	Tpr5g2268	1036	Gene3D	-	373	459	IPR042197	-
	Tpr5g2268	1036	Pfam	NB-ARC domain	228	455	IPR002182	GO:0043531
	Tpr5g2268	1036	SMART	till_3	41	178	IPR000157	GO:0007165
	Tpr5g2268	1036	Gene3D	-	208	369	IPR027417	-
	Tpr5g2268	1036	Gene3D	-	39	207	IPR035897	-
	Tpr5g2268	1036	ProSiteProfiles	TIR domain profile.	40	204	IPR000157	GO:0007165
	Tpr5g2268	1036	SUPERFAMILY	Toll/Interleukin receptor TIR domain	36	181	IPR035897	-
	Tpr5g2268	1036	SUPERFAMILY	L domain-like	566	862	-	-
	Tpr5g2268	1036	SUPERFAMILY	"Winged helix" DNA-binding domain	445	553	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2268	Tpr-Chr5	43714111	43722229	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2268	30	820	WRKY Transcription Factor Family	AT4G12020	34.788	1.03e-113	385

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2268	-		-	cam:101503346	1209.51