Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2260 ATGGGTAGAATATGTCCTAAAGAGATTAATAAAGGTGCTTGGTCTCGAGAAGAAGATGATATTCTTTCCAAATATGTTTCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCTCAAAATGCAGGTTTAAAGCGGTGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAGCCAGGTATAAAGAGAGGCGACATCTCTTCGGATGAAGAGGATATGATCATAAGACTTCATCGTCTACTTGGTAACAGATGGTCTTTGATAGCTAAGAGGCTACCAGGACGAACAGACAATGAAATCAAGAACTACTGGAATACGAATCTATCAAAGAAGTTACAAAAACAACCTACATTATCATCATTGCCATCTTCATCTTCTTTTTCACTTCAACACAATCGTCACAAATGTGGACATGTAGCACCAGAAACTCCAAGGCCTAGAAGATTGAAGATTGTTCATCAATACAAGAAAAATTTGGAGAATATTAATGGAAGTGAGTGTGATCAAGGGAGTGATGAAACTTCTATTGTTGATTATCTCATTGACATTGATCATCAAGATCATTTAATGGTTGTTGATGATGAGTCTAACTCAAAGATTCCAAAAATGGAAGATCATAAGAAGGTAGGTTCAACTAATAGTACTCATAGCTCATCATCACCTTCTCATCATTGTCATCTTTTAGAAGAGAAATTTGAACCTTTAGAGACTCTTTTGGATGTGGAGCTCAAGAAAATGGCTTCCTTTCTTGGACTTGAAAATGATTTATAG 774 0.3618 MGRICPKEINKGAWSREEDDILSKYVSIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISSDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTLSSLPSSSSFSLQHNRHKCGHVAPETPRPRRLKIVHQYKKNLENINGSECDQGSDETSIVDYLIDIDHQDHLMVVDDESNSKIPKMEDHKKVGSTNSTHSSSSPSHHCHLLEEKFEPLETLLDVELKKMASFLGLENDL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2260 257 MobiDBLite consensus disorder prediction 198 212 - -
Tpr5g2260 257 Gene3D - 4 64 - -
Tpr5g2260 257 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Tpr5g2260 257 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Tpr5g2260 257 Gene3D - 68 137 - -
Tpr5g2260 257 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Tpr5g2260 257 PANTHER MYB TRANSCRIPTION FACTOR 1 248 - -
Tpr5g2260 257 SMART sant 63 111 IPR001005 -
Tpr5g2260 257 SMART sant 10 60 IPR001005 -
Tpr5g2260 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Tpr5g2260 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Tpr5g2260 257 CDD SANT 68 109 IPR001005 -
Tpr5g2260 257 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Tpr5g2260 257 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Tpr5g2260 257 MobiDBLite consensus disorder prediction 198 225 - -
Tpr5g2260 257 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 248 - -
Tpr5g2260 257 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2260 Tpr-Chr5 43644903 43646331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2260 8 113 MYB Transcription Factor Family AT5G40330 66.981 2.74e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2260 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2260 K09422 - gmx:100101858 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2260 5 43644903 43646331 Tpr5g2260 5 43644903 43646331 ECH