Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2258 ATGAGTAACTGGTTAGGATTTTCTCTTACACCACAGTTGAGAATTGATGAAGAATTTGGTACAGAAAATCAAAACCAAAATCAAGAACATCATGGAGAAGGATCAGAAATTATAGGAAGAAACTATGTTCCTACTTCTTCTCATCATCTTCATAATCACTTATCTGTTATGCCTCTGCGTTCTGATGGTTCACTCTGTGTTTCTGATACTTTCACTCACTCTGTTACACCTCAAGAATGGAGATATGAAAATGCAATAACTGGTGGAAATTCAAATGAAGAACCACCAAAACTTGAAGATTTTTTGGGGTGTTACCAAAATCAAAACTCTAAAATCAATGTTAATGTAACACCAAGTTTTTGCACTAATAATAATACAGAGATTGAAACAAGGGAGAATCTAACAAACCAAGCTTTGATTAACTCTTTCCATCAAGGATATAATGATAATGATAATAACAATAATAATCATCATGGTTTAATTCATGGTAATAATATGTATAAATCTTGGATGAGTCAGAATCAATTTTCTTCTGATGGGAAAAATTCTAGTGATGGAAATGGTTTTCAATCTCTTAATTTAACTATGAGTCCTAGTGTGCAAAATGGTGTTAGTGTTGGTGTTGGTGGTGCAATTTCTACTGTTCAAGTGAATGAAGATCCTAGAAAAAGGTCTTTGTCAAAATCATCAAATGCTAGAGAATCTGTTCCTCGTAAATCTATTGATACTTTTGGTCAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTATAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGCACATGACTAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAAAGCAGTGGATTTTCAAGAGGTGCATCTGTGTATAGAGGTGTGACAAGACATCATCAACATGGAAGGTGGCAGGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTATATCTTGGTACATTTAGCACACAAGAGGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAATTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACCCTAATCACAGGTGATCTCGCTAAACGCTCTCCTAAAGAATCGCCCGCTCTTCCTGCAGCCACAGCCGAGGACTTCAATTCTTGCGGAAGTTCATCGACACCTTCTCAGCCGCCTCCTCCTCTAGCTATTACCGATGGCAGTGAACAACATTCTGATGAATTGTCGAACATGGTTTGGAATTCCAACAGCGATCAACCACCACAGAATGAGTGCGGAAACAACACCAATATCAATGAATCGTCACAGCACGATTCACAAAGTCCCAAATTACCTAATGAGTTTGGAGTGAGTGGAGCTGATTATGGACATGGTTACTTCACTCTGAATGGACCAAAATATGATGATGGAAGCAATGAAAATGACCACATGAATAACAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1710 0.3789 MSNWLGFSLTPQLRIDEEFGTENQNQNQEHHGEGSEIIGRNYVPTSSHHLHNHLSVMPLRSDGSLCVSDTFTHSVTPQEWRYENAITGGNSNEEPPKLEDFLGCYQNQNSKINVNVTPSFCTNNNTEIETRENLTNQALINSFHQGYNDNDNNNNNHHGLIHGNNMYKSWMSQNQFSSDGKNSSDGNGFQSLNLTMSPSVQNGVSVGVGGAISTVQVNEDPRKRSLSKSSNARESVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPISTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKESPALPAATAEDFNSCGSSSTPSQPPPPLAITDGSEQHSDELSNMVWNSNSDQPPQNECGNNTNINESSQHDSQSPKLPNEFGVSGADYGHGYFTLNGPKYDDGSNENDHMNNNRLGNLGLVNQVPMFALWNE* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2258 569 Pfam AP2 domain 351 402 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 Pfam AP2 domain 250 308 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 MobiDBLite consensus disorder prediction 230 244 - -
Tpr5g2258 569 CDD AP2 249 318 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 SMART rav1_2 250 322 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 SMART rav1_2 352 416 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 MobiDBLite consensus disorder prediction 215 244 - -
Tpr5g2258 569 ProSiteProfiles AP2/ERF domain profile. 352 410 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 511 - -
Tpr5g2258 569 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 PRINTS Ethylene responsive element binding protein signature 392 412 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 SUPERFAMILY DNA-binding domain 351 412 IPR016177 GO:0003677
Tpr5g2258 569 ProSiteProfiles AP2/ERF domain profile. 250 316 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 3 511 - -
Tpr5g2258 569 Gene3D AP2/ERF domain 352 412 IPR036955 GO:0003700|GO:0006355
Tpr5g2258 569 Gene3D AP2/ERF domain 249 318 IPR036955 GO:0003700|GO:0006355
Tpr5g2258 569 CDD AP2 351 412 IPR001471 GO:0003700|GO:0006355
Tpr5g2258 569 SUPERFAMILY DNA-binding domain 249 318 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2258 Tpr-Chr5 43610539 43615382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2258 1 440 AP2-EREBP Transcription Factor Family AT1G72570 49.356 2.37e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tpr5g2258 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2258 K09285 - gmx:100809762 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2258 5 43610539 43615382 Tpr5g2258 5 43610539 43615382 ECH