Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2256 ATGTTGAGTGCAAGTTCAAGAAATAGGTCCCCTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACTGGAACACCTGTTCCACCAGATCTCATTTACTCTATCAAGAGAAGTTTAGACACTTCAATCTCTTCAAGAATCTTTCCACATCCTCCCATTGGGTGGGGATGTTTTGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAATACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACAACAACTAGTAGTTTCTTCTACAAACACAACCTCTTTAACAAACACAACATCATCATCATCATCTCCTTATACTAATAGAAACATCTCCTTGAACAACAACAACAGTAACTTAACTTCTTCTTTTCCTTTTTCTACTTCAATGACTTGTCATGATCAGTCACAACAACAGCAACAACCCTTTTCACAATCTTACCAAAACTCTTCTCTAAACCCTTACTTTTACTCTCAACAATCAAACTCTTCTAAACCCCTTGATCATTCTGATTTTCAATCTCAAGATGCTACTACTCATCATCTCTTTTTGGACTCTTCATCTTATTCTCATGATGATAAAGACTATAGGAGGCAAGTTCATGGAATAAGGGATGGTGTGGATGAGAGAACTTTCTTTCCAGAAGCAACAGGGTCTTCTAGGAGCTATCATCAATATGGTTCATATAATGAACAACTACAAGTGAATCCTTTTAAGTCATATTCAAGTTCACAGCAATTTCAGAACATCAATGATAACACAAGACAGCAAGAACAGCAACAAGAACAACACTGTTTTGTGTTAGGCACTGACTTCAAATCAACAAGACCAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGTGAGTGGACACCAAAGAACACTGATTCTTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACAGATGAGTGA 1071 0.3847 MLSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPVPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQQLVVSSTNTTSLTNTTSSSSSPYTNRNISLNNNNSNLTSSFPFSTSMTCHDQSQQQQQPFSQSYQNSSLNPYFYSQQSNSSKPLDHSDFQSQDATTHHLFLDSSSYSHDDKDYRRQVHGIRDGVDERTFFPEATGSSRSYHQYGSYNEQLQVNPFKSYSSSQQFQNINDNTRQQEQQQEQHCFVLGTDFKSTRPTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2256 356 PANTHER - 1 355 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tpr5g2256 356 MobiDBLite consensus disorder prediction 105 146 - -
Tpr5g2256 356 MobiDBLite consensus disorder prediction 118 146 - -
Tpr5g2256 356 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr5g2256 356 Pfam WRC 77 119 IPR014977 -
Tpr5g2256 356 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Tpr5g2256 356 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr5g2256 356 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr5g2256 356 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2256 Tpr-Chr5 43579996 43582904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2256 3 120 GRF Transcription Factor Family AT3G13960 72.881 2.85e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tpr5g2256 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2256 - - vun:114166369 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2256 5 43579996 43582904 Tpr5g2256 5 43579996 43582904 ECH