Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2196 ATGTCTACTTTCCCAAATACCGTGTCAGATGGCCGGAGAGTAGCCGGAAAAGCGCCGGAGAAGTTTAAATTTTCACAGACTTGTAGTCTCTTGAGTCAATTCTTGAAGGAAAAGAGAATTTCTGGTGATTCTGCTTCTGGATTGTTTGGGAAAATGGATCCTAAAGCTAGTACAAAGGATTTGTTAGGCAATATGCAAAATTCAGATGGGGGTTTGAGACTAAATGCATCAACTATTGATTCTCTTCCTCAGCTTGTGGAAAATCCTTGCATTAAGAAGTCTAATATAAGATCAACGACACCGGAAACACCTCAATTGACACTATTCTATGCCGGGAAATTGTTAGTATTCGATGCTTTTTCGCCTGCGAAAGCAACCGAGATCATGGAACTGGCTACCAAGTTAGCCTCTGAAATTCCAAGCACTGAAGAAAATCCACCTAGTGCACCTATCACTAGTGAAAAATCAAAGGAGTCCAAAGTTCCTCAAACAAACACTGCCTTAGAAACACCGAAACAAGGAAACAAAACCAATTGTTCAGATATGAGATATCCAAGAAGAGCTTCACTTCTTAAGTTCCTTGAGAAAAGAAAAGAAAGGGTTGTTGCTAGAGGACCTTACCAAATAAACAATCACAAAAATGAGGGCAGTAGTTCAGGAAGTGAACCTAAAGATCAACAATGTTCTGATCAATTTGACCTTAACTTATAG 711 0.3938 MSTFPNTVSDGRRVAGKAPEKFKFSQTCSLLSQFLKEKRISGDSASGLFGKMDPKASTKDLLGNMQNSDGGLRLNASTIDSLPQLVENPCIKKSNIRSTTPETPQLTLFYAGKLLVFDAFSPAKATEIMELATKLASEIPSTEENPPSAPITSEKSKESKVPQTNTALETPKQGNKTNCSDMRYPRRASLLKFLEKRKERVVARGPYQINNHKNEGSSSGSEPKDQQCSDQFDLNL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2196 236 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 10 229 - -
Tpr5g2196 236 MobiDBLite consensus disorder prediction 202 236 - -
Tpr5g2196 236 Pfam tify domain 101 132 IPR010399 -
Tpr5g2196 236 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Tpr5g2196 236 SMART tify_2 99 134 IPR010399 -
Tpr5g2196 236 MobiDBLite consensus disorder prediction 210 236 - -
Tpr5g2196 236 MobiDBLite consensus disorder prediction 139 183 - -
Tpr5g2196 236 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 229 IPR040390 -
Tpr5g2196 236 MobiDBLite consensus disorder prediction 139 182 - -
Tpr5g2196 236 Pfam Jas motif 186 208 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2196 Tpr-Chr5 42887365 42890091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2196 12 209 Tify Gene Family AT1G19180 34.222 3.33e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tpr5g2196 tify 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2196 K13464 - gmx:100778559 330.872