Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2194 ATGCAGAATCATAGGCTCAAGCACCAGCAGCAGCAACAACAGCAACAACAACAAGCTCTGATGCAACAAGCTGCTTTGATTCAACAGCAATCTCTCTATCATCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGTAACGTCCATACACAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCAGCCAATGGCCCAGTTGAAGGGTGTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGGTTTATTCATTACTTCGACCGCAGATCTGCTGCTCTAGCCATATTATCTCTCAATGGAAGGCATCTATTTGGACAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACTCTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGTCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAGTGGCTTGGAAGCAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGCTGGAGGCATGGAAGAGAAGCAAACCCCAGACAACAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGACGGTAAAGAGACATCTAACAATGATGCTCCTGAGAACAATCCTCAATATACAACTGTTTATGTGGGTAACCTTGGTTCGGAGGCAACACAGCTTGATCTCCATCGTCATTTCTATGCTCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTCGTGAGATATAGTACTCACGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATACCCAGTCTTATCTCTGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTCTACCTCTGCCAGGTCTATCCGCAACCGATATTTTGGCATACGAGCGGCAGCTAGCAATGAGCAAAATGGGTGGTGTTCATGCTGCTTTGATGCATCCACAAGCACAACATCCTCTTAAGCAGGCTGCAATGGGAGCAAGCCAGGCGATATATGATGGCGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTACTATCAGTAA 1284 0.4626 MQNHRLKHQQQQQQQQQQALMQQAALIQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAANGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAAGGMEEKQTPDNKSVVELTNGSSEDGKETSNNDAPENNPQYTTVYVGNLGSEATQLDLHRHFYALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSYLCGKQIKCSWGSKPTPPGTASNPLPPPAALPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAMGASQAIYDGGFQNVAAAQQMMYYQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2194 427 SUPERFAMILY RNA-binding domain, RBD 258 350 IPR035979 GO:0003676
Tpr5g2194 427 MobiDBLite consensus disorder prediction 226 265 - -
Tpr5g2194 427 Gene3D - 245 347 IPR012677 -
Tpr5g2194 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 422 - -
Tpr5g2194 427 CDD RRM3_TIA1_like 268 343 - -
Tpr5g2194 427 Gene3D - 1 142 IPR012677 -
Tpr5g2194 427 Gene3D - 143 239 IPR012677 -
Tpr5g2194 427 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 9 422 - -
Tpr5g2194 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 135 IPR000504 GO:0003723
Tpr5g2194 427 SUPERFAMILY RNA-binding domain, RBD 140 228 IPR035979 GO:0003676
Tpr5g2194 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Tpr5g2194 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 218 IPR000504 GO:0003723
Tpr5g2194 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 129 IPR000504 GO:0003723
Tpr5g2194 427 SUPERFAMILY RNA-binding domain, RBD 45 139 IPR035979 GO:0003676
Tpr5g2194 427 MobiDBLite consensus disorder prediction 239 265 - -
Tpr5g2194 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 224 IPR000504 GO:0003723
Tpr5g2194 427 CDD RRM1_TIA1_like 63 133 - -
Tpr5g2194 427 Coils Coil 3 23 - -
Tpr5g2194 427 CDD RRM2_PUB1 147 221 - -
Tpr5g2194 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 343 IPR000504 GO:0003723
Tpr5g2194 427 SMART rrm1_1 269 339 IPR000504 GO:0003723
Tpr5g2194 427 SMART rrm1_1 62 131 IPR000504 GO:0003723
Tpr5g2194 427 SMART rrm1_1 147 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2194 Tpr-Chr5 42857951 42863371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2194 62 330 Eukaryotic Initiation Factors Gene Family AT1G49760 25.899 1.39e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2194 K13201 - gmx:100781227 743.421