Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2184 ATGGCTTTGACTCTTGGTAATCGTAGTATGTTTTCAAACATTGATGAAATCAATTCTGATAGAACAAATTGGAATTTTAAGGCAAAGATCATAAGACTTTGGCAAGTGAACGATTTTAATCGACCTAATATGCCTTTTTCTGTTGAAATGGTGTTAATGGATTCAGATGGTTCTAAGATTCATGCCACCATCAAAAAAACACTTATTTACAAGTTTAAACATGATGTAATTGAGGGAAAAGTTTATTCTTTTGAAAATATTGGTGTGGCTGCTAATACTGGAGCTTATAGGACCACACATCATCCATACAAACTGAACTTTCAGTTTGGTTCCATTGTTCAAAGGTTGTCAAATTGTGATATTGTTAAATCTCCATTTACCTTTGTTCCAATTTCTGAAGTTGTAGGTGGCTTATATGACACTGATTTCTTAGTTGATGTGATTGGTCTTTTAACTGAGATTGGTCAGGAACGTGAGATCACTAATCAAAATGGTAGCACAACAAAGCTGAATGTCATTTCCTTGGAGGCTGATGGGCATAAGCTGCAGTGTACACTTTTTGGACCATATGTTGATGAACTGAATACCTTTGTGGGAGCTGGTGATCTAAACAATCATGTGGTCATTGTTCATCTTGCAAAAGCTAAGACCTTTCAAGACAAGATACACATACAGAATTGCATGAATTGTTCTGTTTTGATATTTAACCCAAACTGTGAGGAAAGTAAGATCTTTAGGGCAAGTCTTAATGATTCCGATGAGAATCATTCTCCATTGACCTTTACTCAACTTAGTAATGAGTCAGCTGTGACCCCACTTGATGAGTTTCTGTACAATACTCCAAGGGCAACCTTGCAAGATCTCAAGGATGCTACAAAAGTATCATCACATGTTGTAGCTGCTACTGTGAAGAGAACTTTAAATCCTGATCGTTATTGGTATACAGCATGTTTTTGCGGTAAAGCTGTTATACAAGATTCAAGGTTATGGTTTTGTGAAAAGTGTAATAGGCATGTTCCAAAGGTTGTTCCTAGGTATTGTGTCAAACTTAGAGTCATGGATGATACTGATTCTGCCACGTTTGTTGTTTTTGACAAAGAAGCAAGTGCGATATTTAATATGTCTTGTGCTGATATGCTTCAACTTGGGGATGCTGATGGTGAGCAAATTGTGCCACCTGAAATTGATGACATGCTGGTTAATCATACTTGGCTTTTTATGGTTGAAGCTAAACCTTCTCAGAATCCTAGGTTTGAGCAATCTTTCCGTGTTAGAAAGATTTGTACCGATGAGGTTATAATTAAGCAGTTTAAGGACAAGTGGGATAATGAGGATGCTGTCTGTAATAAAAAAAGAAATGAGGGTGGTTCTTTGAGTACTTTGCTCGATAAGGGGAAAGATGTTTATGTTGGTGGTACCTCTAATTTCCTTTCTGAGGAGTGTCAAAACTTTAGTGGAGATTCTGACAAGGGAAAAGGTTTGATTGTTGATGGAACACCTCTTGAAGTTTCACAAGATTTGATGTTGAAATTTTCAGAATCTATTGTTAATCTTGACGATGATTCTGTTAATACTTCTTTTTGTGTTAAGCCAATGACACCTTGTGTGAGCCCAATGACCTCTACATTGACTGTCAAGCCAATTACATCTGATCCACCTGTGAAGCCAATCAACTTTGTTGCTGCTGTGAACCCAATGCTCTCCGCTGTTTCTGCGAACCCAACTATCTCTGATGTGGTTACTCAATAA 1749 0.3728 MALTLGNRSMFSNIDEINSDRTNWNFKAKIIRLWQVNDFNRPNMPFSVEMVLMDSDGSKIHATIKKTLIYKFKHDVIEGKVYSFENIGVAANTGAYRTTHHPYKLNFQFGSIVQRLSNCDIVKSPFTFVPISEVVGGLYDTDFLVDVIGLLTEIGQEREITNQNGSTTKLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNHVVIVHLAKAKTFQDKIHIQNCMNCSVLIFNPNCEESKIFRASLNDSDENHSPLTFTQLSNESAVTPLDEFLYNTPRATLQDLKDATKVSSHVVAATVKRTLNPDRYWYTACFCGKAVIQDSRLWFCEKCNRHVPKVVPRYCVKLRVMDDTDSATFVVFDKEASAIFNMSCADMLQLGDADGEQIVPPEIDDMLVNHTWLFMVEAKPSQNPRFEQSFRVRKICTDEVIIKQFKDKWDNEDAVCNKKRNEGGSLSTLLDKGKDVYVGGTSNFLSEECQNFSGDSDKGKGLIVDGTPLEVSQDLMLKFSESIVNLDDDSVNTSFCVKPMTPCVSPMTSTLTVKPITSDPPVKPINFVAAVNPMLSAVSANPTISDVVTQ* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2184 582 CDD RPA1_DBD_A_like 27 113 - -
Tpr5g2184 582 Gene3D - 119 261 IPR012340 -
Tpr5g2184 582 PANTHER REPLICATION FACTOR A 1, RFA1 22 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g2184 582 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tpr5g2184 582 Gene3D - 276 436 IPR012340 -
Tpr5g2184 582 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 380 - -
Tpr5g2184 582 SUPERFAMILY Nucleic acid-binding proteins 280 427 IPR012340 -
Tpr5g2184 582 CDD RPA1_DBD_B_like 146 241 - -
Tpr5g2184 582 CDD RPA1_DBD_C 299 411 IPR013955 -
Tpr5g2184 582 Gene3D - 10 115 IPR012340 -
Tpr5g2184 582 Pfam Replication factor-A C terminal domain 300 411 IPR013955 -
Tpr5g2184 582 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Tpr5g2184 582 SUPERFAMILY Nucleic acid-binding proteins 126 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2184 Tpr-Chr5 42689336 42691987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2184 14 376 Core DNA Replication Machinery Family AT2G06510 22.632 8.85e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2184 - - mtr:MTR_4g036240 589.726