Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2182 ATGGCAACCAAAGAAGATTCATCAATGGATTTTCACGAAATCATCATCGAAAGTGAAGGATCAAACTCAAATTCCGAATGGGACGATTCAGAAGAAGATCCTGATTACGACATGCTCGAAGAAACTCATCGTAGCTTCTCCAATCTCTCACTCAAAAACAAGGCAAAAAAGCGCATAGTTGAGAATATGGGTATGGATAGTGCGATCAACTCAGAAGTGTTGGAGTTGAATACACCTTCTGTTGATGGTGATAGTTTTGAAAAAGTTCAGAAAATAATAAAGGCTGGACTGCTAGAGAAATTGAAAGTGGATGAATGCAAGATTTATTTGAAGAAGAATGGTCTGAGGCTAACTGGGAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAAAAAGTATCCGCCTCATAGCTTTGTGTTGAATTGTAAAGGTGATGCATGTACTGGTGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCATCCAGGAGTGGCGGCGGTCCACCGTGTGGCAAAAGGACTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTTTGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTTCACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGCAAAGGCAAAAACTGTTGATGGAAAAGCACTCTCGGGGATCCGTTGCTAGGGCAGATAGGGAAGCAAGAATACAGGAAAAGGAGATGAGAAAATCAATGAAGGAAAATAGGATCTCAAAAAAGGATTCAGCAAAGAACCAATCTCAATCACATTCATCCATCGTAAGGCCACAAATTCAACCTCAAGAAACAACAAATGTACTCATTATTCCACCATCTGCAATTGTAAATAAACCAGCAGCTGTAACTGAACAGCCCGTTCGGTCTATTGACTCTCGAGCTGTCACAGTGGGATCTGACCAGTTCCGAAATTCAGGAAAACCGTCTTTTAATTCAAACCATTATTATGCCGACTATAATTACAGAGACAAACCAACTACTGTTGAGAGATACCATCCTTCCATGGTTGAGACAAACAATTTTGCTGAGAGAACTTTTTATCCAAGGAAGCCTTTGTCAAGTGCAAATCACTTTGTTCCGCGTTTTGCAAATGCAAATCACATCCATACAGTGATCCCAAACCGAGAAAGCTATCAGCAAAAACAGTTTTGTAGACATTTTGCGCGTGGAAGATGCCATTTTGGAGATAACTGCAAATTCTTACATGGTGGGAGAGACTAA 1362 0.4119 MATKEDSSMDFHEIIIESEGSNSNSEWDDSEEDPDYDMLEETHRSFSNLSLKNKAKKRIVENMGMDSAINSEVLELNTPSVDGDSFEKVQKIIKAGLLEKLKVDECKIYLKKNGLRLTGNKDTLIQRIKEHQEIINGGGEKKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGKRTVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGQRQKLLMEKHSRGSVARADREARIQEKEMRKSMKENRISKKDSAKNQSQSHSSIVRPQIQPQETTNVLIIPPSAIVNKPAAVTEQPVRSIDSRAVTVGSDQFRNSGKPSFNSNHYYADYNYRDKPTTVERYHPSMVETNNFAERTFYPRKPLSSANHFVPRFANANHIHTVIPNRESYQQKQFCRHFARGRCHFGDNCKFLHGGRD* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2182 453 Coils Coil 262 282 - -
Tpr5g2182 453 MobiDBLite consensus disorder prediction 1 35 - -
Tpr5g2182 453 SUPERFAMILY SAP domain 87 132 IPR036361 -
Tpr5g2182 453 MobiDBLite consensus disorder prediction 250 291 - -
Tpr5g2182 453 Pfam SAP domain 98 131 IPR003034 -
Tpr5g2182 453 ProSiteProfiles Zinc finger C3H1-type profile. 425 452 IPR000571 GO:0046872
Tpr5g2182 453 MobiDBLite consensus disorder prediction 292 307 - -
Tpr5g2182 453 SUPERFAMILY CCCH zinc finger 426 450 IPR036855 GO:0046872
Tpr5g2182 453 Gene3D - 417 453 - -
Tpr5g2182 453 Pfam CCCH-type zinc finger 431 450 IPR041367 -
Tpr5g2182 453 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 1 451 IPR045124 GO:0003723|GO:0045892
Tpr5g2182 453 MobiDBLite consensus disorder prediction 250 307 - -
Tpr5g2182 453 ProSiteProfiles SAP motif profile. 98 132 IPR003034 -
Tpr5g2182 453 Gene3D SAP domain 88 144 IPR036361 -
Tpr5g2182 453 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 1 451 - -
Tpr5g2182 453 SMART c3hfinal6 426 451 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2182 Tpr-Chr5 42636861 42640941 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr5g2182 SAP 1.2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2182 - - gmx:100815642 526.939