Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2176 ATGGCTGATTCTTCGTTTGAGATAGACAATCCGAGAAGACACTATCCAACTCCAGTGAGTTATCAGAGTGTATCCGGCTCTAGTTCCTTCATACATTCTTCTCGAAGCAAAGTAACTCCGAGAACTAGAAGAACTCGTCGCAACAAAATTCCATCCACACCCTTTGCCTCAGACGACGACCGTTCATGGCAAGGAGAAGTTTCGTGGAAGTTTGAACCAACTGGGTTGCGCGAACATAGTACAAACTTCGGTTCTGTTCTTAGTCCATGGCCAACCAACTCCACCTCTGATCGTAGCCATGTGTTTCGCCAATCAGCTAATGACTATTACCTTTCGAGAATTGGTGGTTTTCGAGGCCTTACAAACCCATCAAATGATCATTCTTCCTATGGAAGAGTTGAACTTAGGAGCCATGTTGCTAGGGCCCACAATGATCATAGTTACTTTGATCAATATAGTGGATTCTCTAAATTAGGAATCATCAAAGAAGGAGTTAGTAGTGGAAGTCGTAACATTAATCATAAGACTAGTCCATTAGCCGAGGAAGACGAGCTCAGTGCGATCGATTATAGTATAACAGATGAACATGTTATGTCACCTTATGGGAATGATAATCATTTTCTTGATGAATTGTCATATGTTAAACATGATCATAAAGTACCATCTTATGGTAACAAATCCCCTAGCCAAATTTATGGTGGTGGTGGTTATAGTCACTATGAGAGTAAAATGGCATCAGGGTTTGATGATGAAGGTGATGAGGATATGGATGAGGATGATGATGATGTTGTAGGTCCTCCAAAGACAGTTGGATTGTTTAGCTTGTTTAGGTATACAAGAAAGTGGGATTGGTTGCTTGTGTTTTTTGGTTGTTTAGGGGCTCTTATAAATGGAGGATCACTTCCTTTTTATTCTTATCTTTTTGGTAACTTGGTTAATAAGCTTTCAAGAGAAGCAAAAGATAACAAATCTCAGCTGATGAATGATGTAGACCAGATATGTGTATTTATGACCGGCTTAGCTGCAGTTGTGGTAGTTGGAGCATATATGGAGATCACATGTTGGAGGTTAGTAGGGGAGAGATCTGCTCAAAGAATTAGAACTGAGTATCTAAGAGCAATTCTTAGACAAGACATAACTTTTTTTGATACAGAAATTAATACTGGTGATATTATGCATGGTATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCTCACTTCATTCATCATATATTTACATTCATATGTGGATATGCAGTTGGATTTAGAAGATCATGGAAAGTGTCATTGGTTGTATTCTCAGTCACACCATTAACAATGTTCTGTGGTATGGCTTACAAAGCACTTTATGGTGGTTTAGCAGCAAAAGAAGAAGCTTCTTATAGGAAAGCTGGAAGCATTGCTGAGCAGGCAATAAGTTCAATTAGGACAGTATTTTCATTTGTTGCTGAAAGCCAATTGGTTGAAAAATATTCTGATCTACTTCAAAAATCAGCTCCAGTTGGGGCTAAACTTGGTTTTGCTAAAGGTGCAGGCATGGGTGTTATCTACTTAGTAACTTATTCAACATGGGCTTTGGCTTTTTGGTATGGTTCTATCTTAATTGCTAAGGGTGAACTTGATGGTGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGTGGAAGAGGCTTGGCATTAGCACTTTCATATTTTGCACAATTTGCACAAGGTACTGTTGCAGCAAGCCGTGTATTCTATGTTATAGAGAGAATTCCTGAGATTGATCCTTATAATCCTGAGGGTAGGAAACTTTCATCTGTTCGTGGAAGGATTGAGTTAAAGAATGTTAGTTTCGCATATCCATCTCGTCCTGATTCACTTATACTTAATTCCATAAACTTGGTATTTCCATCTTCAAAAACTTTGGCATTGGTTGGTGCAAGTGGAGGTGGAAAATCAACTATCTTTGCTCTCATAGAAAGGTTTTATGACCCTATAGAAGGGATTATTACCTTGGATGGACATGATTTAAGGACACTTCAAGTGAAGTGGTTAAGGGATCAAATTGGGATGGTTGGTCAAGAGCCAATTCTGTTTGCTACATCTATACTTGAAAATGTGATGATGGGAAAAGATGATGCTACAAAGGAAGAGGCAATTTCTGCTTGTATTGCTGCTGATGCTCACAATTTCATATCTAAGCTGCCACTGCGCTACGACACTCAGGCTGGTGATAGAGGTACGAAACTTTCGGGAGGTCAAAAGCAAAGAATTGCATTGGCTAGAGCAATGATAAAAAATCCGAAAATCCTTATTTTAGATGAACCAACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTCCAAAGGGCCATTGACAAGATTTCTGCAGGCAGGACAACTATTGTCATTGCTCACAGGATAGCAACAGTGAAGAATGCTGATGCCATTGTAGTACTTGAACACGGTTCTGTCGCTGAGATTGGTGACCATCGCCAGCTTATGGCGAAAACCGGAGCTTACTACAACCTTGTCAAGCTTGCAACTGAATCCATTTCAAAACCTCTTCCATTAGAAACCGGAATGCAAAAAACCAATGATTTGTCGTCCATTAATAATAAATATGCTCCTGATATAGCAAAATCAAGTTATCTAGTCGATATCGATTCAATGCAGGATGAGGAACAAGAAGATATTGAAGATAAAAAATATAAAAAGCCAAGAAATTATAAACTTTCTGAGATATGGAAATTGCAAAAGCCGGAGTTTATGATGCTAATTTCAGGCCTTGTTTTGGGCATGTTTGCTGGTGCTGTTCTGTCCCTTTTTCCATTAGTTTTAGGAATATCCCTTGGAGTATATTTTGGCAATGACACTTCAAAAATGAAAAGAGATGTAGGGTACCTTTGTTTAGTACTTGTCGGCCTTGGATTCGGTTGCATCGTTTCCATGACAGGACAGCAAGGTTTATGTGGTTGGGCAGGTTCAAAGCTAACACTTCGGGTTAGAAACCTCTTGTTTCAATCCATATTGAGACAAGAACCTGGATGGTTTGATTTTGATGAAAACTCCACCGGTGTATTGGTGTCACTGCTCTCGAGAGATTCAGTTAGTTTTCGTTCGGTACTCGGTGACAGATTCTCAGTACTTCTTATGGGATTGAGTTCGGCCGCTGTTGGACTCGGCGTGTCCTTTGCCTTTAATGTCAAACTAACTCTTGTTGCAGCTGCTGTAACACCTTTAACCCTTGGTGCAAGTTACATAAACTTGATCATAAACATTGGTCCGAAAATCAATAACGATTCTTATGCAAGAGCTAGCAATATTGCTTCTGGTGCAGTTTCAAATATAAGGACAGTTGCTACATTTTCTGCTCAGGATCAGATTGTTAAATCCTTTGATAATGCCTTATCAGAACCTAGAAAAAAATCATTAAAAAGTTCACAGCTTCAAGGTCTTGTATTTGGATTGTTCCAAGGTGCTATGTATGCAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTAAAAAAGAACCAAGGAGAATTTGAAGATGTTTATAAGATTTTTCTCATTCTTGTTTTGAGTTCATTTTCTGTTGGTCAACTAGCTGGTTTAGCACCTGATACTTCTATGGCTTCAACATCAATTCCTGCAGTTCAAGATGTGATAAACAGAAAGCCATTGATAGGAAATGATGGAAGAAAAACTAGGAAAGTTGATAGATCAAAGGCTTTTAAAATAGAATTCAAAATGGTGACATTTGCATATCCATCAAGGCCTGAGATAACTGTGCTGAGGAATTTCTGTTTGAAGGTTAAAGGTGGAAGTACCGTGGCTTTGGTAGGACCAAGTGGATCAGGAAAATCAACAGTTGTGTGGTTGACACAGAGATTCTATGATCCTGATCAAGGAAATGTTATGATGAGTGGTGTAGATTTGAGGGAGATTGATGTGAAATGGTTGAGGAGACAAATTGGTTTAGTTGGTCAAGAACCTGCACTTTTTGCTGGGAGCATAAGGGAAAATATTGCATTTGGAGACCAAAGTGCTTCTTGGGCTGAAATTGAAGCTGCTGCAATGGAAGCTTACATCCACAAGTTCATTAGTGGACTTCCTCAGGGTTATGAAACTCAGGTTGGTGAAAGTGGAGTCCAATTATCAGGTGGACAAAAACAAAGGATAGCTATAGCAAGGGCCATATTGAAGAAATCAAAGGTGCTTCTACTTGATGAAGCAAGCAGTGCATTGGACTTAGAATCAGAAAAACACATACAAGAAGCTCTTAAGAATGTTTCCAAAGAAGCAACAACTATAATAGTTGCGCATCGTCTTTCTACAATAAGAGAAGCTGATAAAATTGCAGTTATGAGAAATGGAGAAGTAGTTGAGTATGGTAGCCATGACACTCTTATTTCTTCAAATCAAAATGGTTTGTATGCTAGTCTTGTTAGAGCTGAGACCGAAGCCAATGCATTTGCTTGA 4491 0.3914 MADSSFEIDNPRRHYPTPVSYQSVSGSSSFIHSSRSKVTPRTRRTRRNKIPSTPFASDDDRSWQGEVSWKFEPTGLREHSTNFGSVLSPWPTNSTSDRSHVFRQSANDYYLSRIGGFRGLTNPSNDHSSYGRVELRSHVARAHNDHSYFDQYSGFSKLGIIKEGVSSGSRNINHKTSPLAEEDELSAIDYSITDEHVMSPYGNDNHFLDELSYVKHDHKVPSYGNKSPSQIYGGGGYSHYESKMASGFDDEGDEDMDEDDDDVVGPPKTVGLFSLFRYTRKWDWLLVFFGCLGALINGGSLPFYSYLFGNLVNKLSREAKDNKSQLMNDVDQICVFMTGLAAVVVVGAYMEITCWRLVGERSAQRIRTEYLRAILRQDITFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGMAYKALYGGLAAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLVEKYSDLLQKSAPVGAKLGFAKGAGMGVIYLVTYSTWALAFWYGSILIAKGELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYVIERIPEIDPYNPEGRKLSSVRGRIELKNVSFAYPSRPDSLILNSINLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDDATKEEAISACIAADAHNFISKLPLRYDTQAGDRGTKLSGGQKQRIALARAMIKNPKILILDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNADAIVVLEHGSVAEIGDHRQLMAKTGAYYNLVKLATESISKPLPLETGMQKTNDLSSINNKYAPDIAKSSYLVDIDSMQDEEQEDIEDKKYKKPRNYKLSEIWKLQKPEFMMLISGLVLGMFAGAVLSLFPLVLGISLGVYFGNDTSKMKRDVGYLCLVLVGLGFGCIVSMTGQQGLCGWAGSKLTLRVRNLLFQSILRQEPGWFDFDENSTGVLVSLLSRDSVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNVKLTLVAAAVTPLTLGASYINLIINIGPKINNDSYARASNIASGAVSNIRTVATFSAQDQIVKSFDNALSEPRKKSLKSSQLQGLVFGLFQGAMYAAYTLTLWFGAYLVKKNQGEFEDVYKIFLILVLSSFSVGQLAGLAPDTSMASTSIPAVQDVINRKPLIGNDGRKTRKVDRSKAFKIEFKMVTFAYPSRPEITVLRNFCLKVKGGSTVALVGPSGSGKSTVVWLTQRFYDPDQGNVMMSGVDLREIDVKWLRRQIGLVGQEPALFAGSIRENIAFGDQSASWAEIEAAAMEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQEALKNVSKEATTIIVAHRLSTIREADKIAVMRNGEVVEYGSHDTLISSNQNGLYASLVRAETEANAFA* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2176 1496 Pfam ABC transporter transmembrane region 287 559 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2176 1496 Pfam ABC transporter transmembrane region 928 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2176 1496 SMART AAA_5 639 825 IPR003593 -
Tpr5g2176 1496 SMART AAA_5 1277 1463 IPR003593 -
Tpr5g2176 1496 CDD ABC_MTABC3_MDL1_MDL2 1250 1488 - -
Tpr5g2176 1496 CDD ABC_MTABC3_MDL1_MDL2 612 849 - -
Tpr5g2176 1496 SUPERFAMILY ABC transporter transmembrane region 269 597 IPR036640 GO:0005524|GO:0016021
Tpr5g2176 1496 ProSitePatterns ABC transporters family signature. 1389 1403 IPR017871 GO:0005524
Tpr5g2176 1496 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524
Tpr5g2176 1496 Gene3D - 1239 1490 IPR027417 -
Tpr5g2176 1496 Gene3D - 602 850 IPR027417 -
Tpr5g2176 1496 PANTHER ABC TRANSPORTER B FAMILY 94 1495 - -
Tpr5g2176 1496 Pfam ABC transporter 1268 1416 IPR003439 GO:0005524
Tpr5g2176 1496 Pfam ABC transporter 630 779 IPR003439 GO:0005524
Tpr5g2176 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1247 1487 IPR027417 -
Tpr5g2176 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 288 577 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2176 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 848 IPR027417 -
Tpr5g2176 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1250 1486 IPR003439 GO:0005524
Tpr5g2176 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 848 IPR003439 GO:0005524
Tpr5g2176 1496 CDD ABC_6TM_Pgp_ABCB1_D2_like 917 1232 - -
Tpr5g2176 1496 SUPERFAMILY ABC transporter transmembrane region 916 1230 IPR036640 GO:0005524|GO:0016021
Tpr5g2176 1496 PANTHER - 94 1495 - -
Tpr5g2176 1496 Gene3D ABC transporter type 1, transmembrane domain 274 1216 IPR036640 GO:0005524|GO:0016021
Tpr5g2176 1496 Gene3D ABC transporter type 1, transmembrane domain 1217 1492 IPR036640 GO:0005524|GO:0016021
Tpr5g2176 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 930 1214 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2176 1496 CDD ABC_6TM_Pgp_ABCB1_D1_like 288 585 - -
Tpr5g2176 1496 MobiDBLite consensus disorder prediction 1 61 - -
Tpr5g2176 1496 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2176 Tpr-Chr5 42564964 42572325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2176 900 1496 Calmodulin-binding Proteins AT2G36910 36.816 2.31e-106 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2176 K05658 - gmx:100816700 2251.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2176 5 42564964 42572325 Tpr5g2176 5 42564964 42572325 ECH