Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2145 ATGTGTGGTGGTGCTATTATTTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACTGCTGATATCTTGTGGCCAAATTTGAGGAAAACTGGTTCCAAAAAATCATCTTTTTTGCTTGACGATGATTTTGAAGCTGGTTTCAGACAGTTTAAGGATGATTCTGATTTCGATGAAGACGAGGATGAAGATGACGATGAAGGGTTGTTGGTCGGTGTCAAAGGTTTTACCTTTGCTGCTTCTAACAACAAATCTTCAAGGAACTTCTCTCGTGGCTCGGCTGGTGCAAAATCTGTGGCATCGAAATCAAATGAGCAAGCTGAAAAGGAATCGAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGCCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGATCCAAGGAAAGGAGTCCGTGTTTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGACGAGGCTCCAAATGCTTCCTCAAAACGTCTGAAGACAAATCCTGATAACCAGCTGTTGAACAAAAATCTGAACTCTTTCAAGCCGAAGGGAAACAACAAAATGTTCAATTTCAGCGAGAATATGGAGAACTTCTATTCTCCTATGGATCAGGTTGAACAGAAACCATTGGTTAACAACCAATATGGTGCTGCTGACATCGGAGCCTTCGCTGGAAACGGAGTTCACCTTGCACCTGCTGATGTTAATGCTTATTTCAGTTCTGAGCATTCAAGCAACTCGTTTGATTATTCTGATTTATGTTGGGGGGAACAAGGCCCGAAAACCCCTGAGATTTCCTCGGTGTTTTCTGCTCCTCTCGAAGCTGAACCTCAGATGAACATGCAGTCTAACAACTCTCAGGATATGCTACCTATGCAAGCTGAATCTGCAAAGACACTCTCTGAGGAGCTTGCAGATATCGAATCCCAGCTGAAGTTCTTCGAGAACTCATTCGATGATAACTGGAGTGATGCTTCACTTGCGTCTTTGCTCGGTGCTGATGTAACTCAGGATGCTGGAAACACAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATCGCAGGCGGAGTTTTCTGA 1158 0.4577 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKTGSKKSSFLLDDDFEAGFRQFKDDSDFDEDEDEDDDEGLLVGVKGFTFAASNNKSSRNFSRGSAGAKSVASKSNEQAEKESKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEAPNASSKRLKTNPDNQLLNKNLNSFKPKGNNKMFNFSENMENFYSPMDQVEQKPLVNNQYGAADIGAFAGNGVHLAPADVNAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAPLEAEPQMNMQSNNSQDMLPMQAESAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGADVTQDAGNTMNLWSFDDLPSIAGGVF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2145 385 MobiDBLite consensus disorder prediction 91 126 - -
Tpr5g2145 385 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Tpr5g2145 385 PANTHER DNA-BINDING DOMAIN 1 379 IPR044808 GO:0003700|GO:0009873
Tpr5g2145 385 PANTHER EREBP TRANSCRIPTION FACTOR 1 379 - -
Tpr5g2145 385 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Tpr5g2145 385 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Tpr5g2145 385 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Tpr5g2145 385 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Tpr5g2145 385 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Tpr5g2145 385 Coils Coil 323 343 - -
Tpr5g2145 385 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Tpr5g2145 385 MobiDBLite consensus disorder prediction 91 106 - -
Tpr5g2145 385 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2145 Tpr-Chr5 42244613 42247450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2145 1 385 AP2-EREBP Transcription Factor Family AT3G14230 42.716 2.63e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2145 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2145 K09286 - gmx:100818646 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2145 5 42244613 42247450 Tpr5g2145 5 42244613 42247450 ECH