Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2141 ATGGGAAAATTAAGCAAGTTCTTTTCAAAATTCCTATGCAAGAAGGATTTCGTGAAAGATGAAGTCTTCCTGTTCGAATACCTAAAAGCCAGAGAATTAATACAAGCAAAAATGGAACTTGACGATCAATTAAAAATATTAAAAATATCTTATCAGACTTGTGCAGAGGAAATACAATTCCAAGAAGTATTATATTCCTCTATATTGGATGGTGAAATTGATAATGACAATAACACCCTTTTGAGAAACCTCAAACAGAAAGAGACTTTTGAAGATGGTGAATCTTCTTCTTCTTCTTCTTCTTCTTCTCAATTGAAACATTCATATTGTGCTATCTGTATGGAAGCTAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTACAAAAATTCAAGAGAATATAGCAATGGTAAAATGTCCTGATCCAAAATGCAATGATATTTTGGAGCCTTATGATTGTATTTCAATTATACCAAAGGAAGTATTTGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGCATCACAAAAATTTTATTGTCCTTATAATGATTGTTCAGCTATGTTGGTGAATGATGTAAAGGGAGTTGTGACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGTGCACAATGTAAGGTTTCATGGCACGCCGGAGTTGATTGTAAAGAGTTTCGAAGCTTGGAAGTTGGCGAGCGAGGAGCGGAAGATCTAATGGTAATGGAACTTGCTAAGAACAACAATTGGAAAAGATGTCCAAAATGCAGCTTTTATGTGGAAAGAAATAAAGGATGTAATCGCATTATATGCAGGTACAAAACATTTTCCTCATTGTGTGGTCACCACTTTTGCTATGGCTGTGGATCCACTTGGAAGAGTAATTGCCATTATAAATGTGCAGTGCAGCTCTAA 966 0.3489 MGKLSKFFSKFLCKKDFVKDEVFLFEYLKARELIQAKMELDDQLKILKISYQTCAEEIQFQEVLYSSILDGEIDNDNNTLLRNLKQKETFEDGESSSSSSSSSQLKHSYCAICMEAKPIEEMFENRNCSHSFCEDCVGSYLATKIQENIAMVKCPDPKCNDILEPYDCISIIPKEVFERWENALCENLVLASQKFYCPYNDCSAMLVNDVKGVVTVSECPHCHRLFCAQCKVSWHAGVDCKEFRSLEVGERGAEDLMVMELAKNNNWKRCPKCSFYVERNKGCNRIICRYKTFSSLCGHHFCYGCGSTWKSNCHYKCAVQL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2141 321 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
Tpr5g2141 321 Gene3D - 237 319 - -
Tpr5g2141 321 ProSiteProfiles Zinc finger RING-type profile. 110 158 IPR001841 -
Tpr5g2141 321 SUPERFAMILY RING/U-box 251 317 - -
Tpr5g2141 321 ProSiteProfiles TRIAD supradomain profile. 106 321 IPR044066 -
Tpr5g2141 321 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 40 318 - -
Tpr5g2141 321 SUPERFAMILY RING/U-box 185 244 - -
Tpr5g2141 321 Pfam IBR domain, a half RING-finger domain 178 240 IPR002867 -
Tpr5g2141 321 Pfam IBR domain, a half RING-finger domain 261 313 IPR002867 -
Tpr5g2141 321 SUPERFAMILY RING/U-box 107 187 - -
Tpr5g2141 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Tpr5g2141 321 SMART ibrneu5 250 317 IPR002867 -
Tpr5g2141 321 SMART ibrneu5 178 240 IPR002867 -
Tpr5g2141 321 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 40 318 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2141 Tpr-Chr5 42172502 42173537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2141 91 307 C3H Transcription Factor Family AT2G19610 26.087 8.76e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2141 K11975 - gmx:100815626 348.591