Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2140 ATGGAAATTGGCACATTCCTACTTTGCCATGGCCTACCATTTGTATTGATAATGACAATAATTTCGAGAACAATCAAACAGATCGAGAAACAGACTTGTAATGAGAAAGAAGAGATTGAGGAGGAGAGTGATTCTCAATTGAAACAAACCTATTGTGCAATATGTATGGACGAAAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACACTTTTTGTGAAACTTGTGTTGGAAGTTATCTAGATGCTAAAATTAAAGAGAATATAGCAATGGTAAAATGTCCTGATCCAAACTGCAATGATATTTTGGAGCCTAATGATTGTATTTCAATTATACCAAAAGATGTGTTTGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTGTGACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGTGCACAATGTAAAGTTTCATGGCATGCAGGAGTCGATTGTACGGAGTTTCAAAGCTTAAAAAATAGCGATCAGGGGTGCCAATCAGATCTAACGGCTTTGCAATTTGCTAAGAAAAAGAAGTGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGTGAAGGATGTAATAAAATTACATGCAGGTGTCGTCATCAATTTTGCTATGTTTGTGGATCCGATTGGAAGCCGTCGCATCATGATTGTAAAGAAATTTGA 768 0.3542 MEIGTFLLCHGLPFVLIMTIISRTIKQIEKQTCNEKEEIEEESDSQLKQTYCAICMDEKPIEEMFENRNCSHTFCETCVGSYLDAKIKENIAMVKCPDPNCNDILEPNDCISIIPKDVFERWENALCENLVLGSQKFYCPFNDCSAMLVNDGNEVVTVSECPHCHRLFCAQCKVSWHAGVDCTEFQSLKNSDQGCQSDLTALQFAKKKKWKRCSKCSFYVERSEGCNKITCRCRHQFCYVCGSDWKPSHHDCKEI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2140 255 ProSiteProfiles TRIAD supradomain profile. 48 255 IPR044066 -
Tpr5g2140 255 SMART ibrneu5 120 182 IPR002867 -
Tpr5g2140 255 SMART ibrneu5 193 252 IPR002867 -
Tpr5g2140 255 SUPERFAMILY RING/U-box 197 252 - -
Tpr5g2140 255 SUPERFAMILY RING/U-box 49 129 - -
Tpr5g2140 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 133 IPR013083 -
Tpr5g2140 255 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 37 253 - -
Tpr5g2140 255 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
Tpr5g2140 255 ProSiteProfiles Zinc finger RING-type profile. 52 97 IPR001841 -
Tpr5g2140 255 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 253 IPR031127 GO:0004842|GO:0016567
Tpr5g2140 255 Pfam IBR domain, a half RING-finger domain 204 252 IPR002867 -
Tpr5g2140 255 Pfam IBR domain, a half RING-finger domain 121 182 IPR002867 -
Tpr5g2140 255 SUPERFAMILY RING/U-box 127 186 - -
Tpr5g2140 255 Gene3D - 179 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2140 Tpr-Chr5 42167044 42167994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2140 6 243 C3H Transcription Factor Family AT2G19610 30.196 1.55e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2140 K11975 - gmx:100815626 312.383