Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr5g2140 | ATGGAAATTGGCACATTCCTACTTTGCCATGGCCTACCATTTGTATTGATAATGACAATAATTTCGAGAACAATCAAACAGATCGAGAAACAGACTTGTAATGAGAAAGAAGAGATTGAGGAGGAGAGTGATTCTCAATTGAAACAAACCTATTGTGCAATATGTATGGACGAAAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACACTTTTTGTGAAACTTGTGTTGGAAGTTATCTAGATGCTAAAATTAAAGAGAATATAGCAATGGTAAAATGTCCTGATCCAAACTGCAATGATATTTTGGAGCCTAATGATTGTATTTCAATTATACCAAAAGATGTGTTTGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTGTGACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGTGCACAATGTAAAGTTTCATGGCATGCAGGAGTCGATTGTACGGAGTTTCAAAGCTTAAAAAATAGCGATCAGGGGTGCCAATCAGATCTAACGGCTTTGCAATTTGCTAAGAAAAAGAAGTGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGTGAAGGATGTAATAAAATTACATGCAGGTGTCGTCATCAATTTTGCTATGTTTGTGGATCCGATTGGAAGCCGTCGCATCATGATTGTAAAGAAATTTGA | 768 | 0.3542 | MEIGTFLLCHGLPFVLIMTIISRTIKQIEKQTCNEKEEIEEESDSQLKQTYCAICMDEKPIEEMFENRNCSHTFCETCVGSYLDAKIKENIAMVKCPDPNCNDILEPNDCISIIPKDVFERWENALCENLVLGSQKFYCPFNDCSAMLVNDGNEVVTVSECPHCHRLFCAQCKVSWHAGVDCTEFQSLKNSDQGCQSDLTALQFAKKKKWKRCSKCSFYVERSEGCNKITCRCRHQFCYVCGSDWKPSHHDCKEI* | 256 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr5g2140 | 255 | ProSiteProfiles | TRIAD supradomain profile. | 48 | 255 | IPR044066 | - | |
Tpr5g2140 | 255 | SMART | ibrneu5 | 120 | 182 | IPR002867 | - | |
Tpr5g2140 | 255 | SMART | ibrneu5 | 193 | 252 | IPR002867 | - | |
Tpr5g2140 | 255 | SUPERFAMILY | RING/U-box | 197 | 252 | - | - | |
Tpr5g2140 | 255 | SUPERFAMILY | RING/U-box | 49 | 129 | - | - | |
Tpr5g2140 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 133 | IPR013083 | - | |
Tpr5g2140 | 255 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 37 | 253 | - | - | |
Tpr5g2140 | 255 | ProSitePatterns | Zinc finger RING-type signature. | 70 | 79 | IPR017907 | - | |
Tpr5g2140 | 255 | ProSiteProfiles | Zinc finger RING-type profile. | 52 | 97 | IPR001841 | - | |
Tpr5g2140 | 255 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 37 | 253 | IPR031127 | GO:0004842|GO:0016567 | |
Tpr5g2140 | 255 | Pfam | IBR domain, a half RING-finger domain | 204 | 252 | IPR002867 | - | |
Tpr5g2140 | 255 | Pfam | IBR domain, a half RING-finger domain | 121 | 182 | IPR002867 | - | |
Tpr5g2140 | 255 | SUPERFAMILY | RING/U-box | 127 | 186 | - | - | |
Tpr5g2140 | 255 | Gene3D | - | 179 | 255 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr5g2140 | Tpr-Chr5 | 42167044 | 42167994 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr5g2140 | 6 | 243 | C3H Transcription Factor Family | AT2G19610 | 30.196 | 1.55e-24 | 99.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr5g2140 | K11975 | - | gmx:100815626 | 312.383 |