Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2139 ATGGAAATGGACAAGGCCATTTCCAAATCATTTACTAGCCTTCAAATTAATACCAAATCCAACATTACCAAAGACTCAAACCAAATCAACAAAAAAAAATCAAGTTCTTCTTCAAAAAACAAATGGTTGGGTTTCATTTCATGCATTCCATGTTTTACTAGTAATAAAGACTTGAAGAAAAATATTTGTGAGGGCAAGGAGGGAAATTCATCCTCTACAAAACATGAATATCAAAGTTTAGAAGACATTATTTTCCATGATGCTAAAGAAAATATTCCAATATCTAAGGAGACTTTTGAAGGCGAATCTTCTTCATCTCGATTGAAACAATCTTATTGTGCTATTTGCATGGAAGCTAAACATGTTCAAGAAATGTTCGAAAACCGAAAGTGTACACATTCTTTTTGTAAAGATTGTGTTGCAAGTTATCTAGTTGCAAAAATTCAAGAGAATATAGCAAAGATAAAATGTCCTCAACCAAAATGTAAGGTTATTTTGGAGCCTCAAAATTGTATTTCAATTATACCAAAGGATATGTTTGAAAGATGGGAAAATGCAACTATTGAGAATTTGGTGTTAGGATCACAAAAGTTTTATTGTCCTTTTAAGGATTGTTCAGCTATGTTGGTGAATGATGGAAAGAAAGTTGTGACGGCTTCGGAATGTCCGATTTGTCATAGATTGTTTTGTGCACAATGTAAGGTTTCATGGCACGCCGGAGTTAATTGTAAAGAGTTTCAAAGCTTGGAAGTTGGCGAGCGAGGGGCGGAAGATCTAATGGTAATGGAACTTGCTAAGAACAACAATTGGAAAAGATGTCCAAACTGCAGCTTTTATGTGGAAAGAAATAAAGGATGTAATCGCATTCTATGCAGGTGTGGTAATTATTTTTGCTATGGCTGTGGATCCGATTGGAATTATCAAACTGGTAGTCATTTTTGTTTTCAAACTCAAGAAACAACTTAG 966 0.3416 MEMDKAISKSFTSLQINTKSNITKDSNQINKKKSSSSSKNKWLGFISCIPCFTSNKDLKKNICEGKEGNSSSTKHEYQSLEDIIFHDAKENIPISKETFEGESSSSRLKQSYCAICMEAKHVQEMFENRKCTHSFCKDCVASYLVAKIQENIAKIKCPQPKCKVILEPQNCISIIPKDMFERWENATIENLVLGSQKFYCPFKDCSAMLVNDGKKVVTASECPICHRLFCAQCKVSWHAGVNCKEFQSLEVGERGAEDLMVMELAKNNNWKRCPNCSFYVERNKGCNRILCRCGNYFCYGCGSDWNYQTGSHFCFQTQETT* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2139 321 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 82 308 IPR031127 GO:0004842|GO:0016567
Tpr5g2139 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 193 IPR013083 -
Tpr5g2139 321 SUPERFAMILY RING/U-box 254 316 - -
Tpr5g2139 321 ProSiteProfiles Zinc finger RING-type profile. 113 161 IPR001841 -
Tpr5g2139 321 Pfam IBR domain, a half RING-finger domain 182 243 IPR002867 -
Tpr5g2139 321 Pfam IBR domain, a half RING-finger domain 264 308 IPR002867 -
Tpr5g2139 321 SMART ibrneu5 253 314 IPR002867 -
Tpr5g2139 321 SMART ibrneu5 181 243 IPR002867 -
Tpr5g2139 321 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Tpr5g2139 321 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 82 308 - -
Tpr5g2139 321 SUPERFAMILY RING/U-box 110 190 - -
Tpr5g2139 321 ProSiteProfiles TRIAD supradomain profile. 109 318 IPR044066 -
Tpr5g2139 321 SUPERFAMILY RING/U-box 189 247 - -
Tpr5g2139 321 Gene3D - 240 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2139 Tpr-Chr5 42155494 42157413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2139 78 303 C3H Transcription Factor Family AT2G19610 25.311 1.89e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2139 K11975 - gmx:100815626 321.627