Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2134 ATGTCTGACCTATTTGTGCATACAAGGTCTGGGCAACCTCAGATGATGAATGGAGCTGGTCAAAAACTGACTACTAATGATGCCTTAGCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGATGAATTTTTGGAGGTCATGAAAGAGTTTAAAGGACAGAGAATTGATACTGTGGGTGTCATCGCTAGAGTGAAGGATCTTTTTAGAGGTCACACAGATTTGATATTAGGATTCAACACCTTTTTGCCAAAGGGATATGAAATCACCCTTCCGATAGAGGATGAGCAACCTCACCCGAAAAAGCCAGTTGAATTTGATGAAGCTATGAGTTATGTGAACAAGATAAAGACTCGGTTTCGTGGCGATGATCGTGTTTACAAGTCATTTCTAGAAATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCCCTCTTTGAAGACCACCCAGATCTTCTTGACGGGTTTATTCAGTTTCTTCCTGACGCTATCACAGCTGCCTCTACTCATGCTGCTGCTCGGGATTCTGTGTTTCGTGATAGGCGCTCTGCAATGCCAACAGTGCGGCAAGTGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACACGGTGACCGTGACCCCAGTGTTGACCGTCCTGACCCAGAGCATGATGGACGCTTGTTCAGGGCTGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGAGCCGCAGAGAAGATAGAGACAGGAGAGAACGAGAACGAAATGATAGAGATTATGAGCATGACAGGGGTCGAGATAGGGAACGGTTATCCCAGAAACGGAAATCTGATCATAAGGTTGAAGACTCAGGAGCTGAACCATTGCTTCATGCAGATCAAAATTTTGGTATGTATAGTCAAGAGTTAGCTTTCTGTGCTGAAGTCAAAGAGAGATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATTATTACTCGACAAGAATTGCAGTCACTGCTTGTGATGTTAATAGGTACAAAACTTCAACATGTTGTAGCCACTTTAGCACTTGAAATCTGGGAGCAGCAGGGTCCATCTGCCAGAACACAAGTAAAGCCACGCGATGGTTTGTTTTGGTTCAACAAACCAGAGATATTGTTATGGCTAATACAATTTGTGATATTTCAGAATGCCTTTGAAATGGCTTCATTTATTTGGACATTGTGGGGATTTAAAGAACAATCATACTTCATGAGACACCATTATATGATCATCATTCGGCTGACATGTGGAGTTTTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTTAATGTGATAGTTTCACAGATGGGATCGCGATGTAAGAAGGTTCTAGTGACAGAGAGTGTTAGAGATTCCTTACACAGTTGGTGTAAGAGAGTAAAACAGAAATCTAAGCATGATCAGGGACCAGTAACAGTGGTATCTGGCACTCTAACTCGAACAACTTCCTTAGACTTAGAGTCTTTGAATCAGATGACAGTAACTTCAGTAGACCAGCTGAATTTTCTGACTTCAAACAACCTCGATGATTCAACCGATTTGTCAGAATCCGTACATATTAATTCACATTACAATAATGTTGACAACGGAGAGGAAGCTAAAGTTGAGACTCTTCTTGATTTGTTTCACAAAACATGA 1719 0.413 MSDLFVHTRSGQPQMMNGAGQKLTTNDALAYLKAVKDIFQDKRDKYDEFLEVMKEFKGQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPHPKKPVEFDEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKSIDAVYQEVAALFEDHPDLLDGFIQFLPDAITAASTHAAARDSVFRDRRSAMPTVRQVHVEKRERTIVSHGDRDPSVDRPDPEHDGRLFRAEKEHKRRVEKEKSRREDRDRRERERNDRDYEHDRGRDRERLSQKRKSDHKVEDSGAEPLLHADQNFGMYSQELAFCAEVKERLRNPDDYQEFLKCLHIYSREIITRQELQSLLVMLIGTKLQHVVATLALEIWEQQGPSARTQVKPRDGLFWFNKPEILLWLIQFVIFQNAFEMASFIWTLWGFKEQSYFMRHHYMIIIRLTCGVFVQFWCSYMTVPLNVIVSQMGSRCKKVLVTESVRDSLHSWCKRVKQKSKHDQGPVTVVSGTLTRTTSLDLESLNQMTVTSVDQLNFLTSNNLDDSTDLSESVHINSHYNNVDNGEEAKVETLLDLFHKT* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2134 572 Pfam Mlo family 350 502 IPR004326 GO:0006952|GO:0016021
Tpr5g2134 572 Gene3D Paired amphipathic helix 304 361 IPR036600 GO:0006355
Tpr5g2134 572 MobiDBLite consensus disorder prediction 207 295 - -
Tpr5g2134 572 Pfam Paired amphipathic helix repeat 44 88 IPR003822 GO:0006355
Tpr5g2134 572 Pfam Paired amphipathic helix repeat 131 174 IPR003822 GO:0006355
Tpr5g2134 572 SUPERFAMILY PAH2 domain 20 90 IPR036600 GO:0006355
Tpr5g2134 572 PANTHER SIN3B-RELATED 16 357 IPR039774 GO:0003714
Tpr5g2134 572 MobiDBLite consensus disorder prediction 207 297 - -
Tpr5g2134 572 ProSiteProfiles PAH domain profile. 107 177 IPR003822 GO:0006355
Tpr5g2134 572 ProSiteProfiles PAH domain profile. 21 91 IPR003822 GO:0006355
Tpr5g2134 572 SUPERFAMILY PAH2 domain 104 176 IPR036600 GO:0006355
Tpr5g2134 572 Gene3D Paired amphipathic helix 106 178 IPR036600 GO:0006355
Tpr5g2134 572 SUPERFAMILY PAH2 domain 307 356 IPR036600 GO:0006355
Tpr5g2134 572 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 16 357 - -
Tpr5g2134 572 Gene3D Paired amphipathic helix 27 89 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2134 Tpr-Chr5 42108340 42115863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2134 349 572 MLO family AT1G11000 51.301 9.85e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr5g2134 Mlo 5.2e-54 No_clan