Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2127 ATGATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAACAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCAATTATTGCCATTGTTGCATCAACAACAAAAAATTCCAACAAAACCAAAAACAACAACATTTCTTCATCTTCTCTTTTACTCTCTCACCATTCACACACCATTATCAAAAAAGCTTGCACAACCACACTCTACCCTGAACTCTGTTTCTCAGCCTTAGCCTCTGAGCCAAACATAACTCACAAAGTCACAAACCACAAAGATGTAATTTCATTGTCTCTTAACATCACAAAAAGAGCCGTTGAACACAATTACTTCACCGTCAAAAAACTTCTATTGCGAAAAACTCTCACAAAAAGAGAGAAAACTGCTCTTCATGATTGTTTAGAAACCATTGATGAAACACTAGATGAACTCAAAGAAGCAGAGGATGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACGCTCATAAGCTCCGCCATTACCAACCAGGTAACTTGCTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGTTCTAGAAGCAGGAGAAGTCCACGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCTGAATTTGAACAAACCAATACGGTGTTAGGAAGTGGAAAAAACAATAGAAAATTATTGGAAGACGAAAGTGGGGTGCAGTGGCCGGAGTGGATGTCAGTAGGGGACAGGAGGCTACTTCAAGGGGCAGCGGTGAAAGCGGATGTGGTTGTGGCAGCGGACGGAAGTGGGAACTTTAAGACGGTATCGGAGGCTGTGGCTGCTGCTCCTTTAAAGAGTAGTAAGAGATTTGTTATTAAGATAAAAGCTGGGGTGTATAAAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAAGTAATACTATTATTACTGGTAGTAGAAATGTTGTTGATGGAAGCACCACTTTTCACTCAGCTACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCTGGCCCTTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTTTATGTTCACAACAATAGACAATTTTTTGTCAATTGTTTCATCTCTGGTACCGTTGATTTCATCTTTGGCAATGCAGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGTCGTCCTGATTCAGGACAAAAAAATATGGTCACGGCGCAAGGTAGAGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAGAACAATTTTCCTACTTATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGTATTAGTGATGTTATTCAACCTGTTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGAGCTGGTGCTGGTACTTCTAATAGGGTTACTTGGAAAGGATTTAAGGTCATTACTAGTGCTTCTGAGGCCCAAGGTTTTACTGCTGGAAGTTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA 1776 0.397 MMNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIIAIVASTTKNSNKTKNNNISSSSLLLSHHSHTIIKKACTTTLYPELCFSALASEPNITHKVTNHKDVISLSLNITKRAVEHNYFTVKKLLLRKTLTKREKTALHDCLETIDETLDELKEAEDDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKVLEAGEVHVEHMCSNALAMIKNMTDTDIAEFEQTNTVLGSGKNNRKLLEDESGVQWPEWMSVGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYKENVDVPKKVTNIMFLGDGRSNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPVGWHEWNGNFALNTLVYREYQNTGAGAGTSNRVTWKGFKVITSASEAQGFTAGSFIGGSSWLGSTGFPFSLGL* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2127 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 228 IPR035513 -
Tpr5g2127 591 SMART PMEI_2 64 223 IPR006501 GO:0004857
Tpr5g2127 591 TIGRFAM PME_inhib: pectinesterase inhibitor domain 58 227 IPR006501 GO:0004857
Tpr5g2127 591 Gene3D - 274 591 IPR012334 -
Tpr5g2127 591 Coils Coil 138 158 - -
Tpr5g2127 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 228 IPR035513 -
Tpr5g2127 591 PANTHER PECTINESTERASE 16 590 - -
Tpr5g2127 591 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Tpr5g2127 591 Pfam Pectinesterase 280 576 IPR000070 GO:0030599|GO:0042545
Tpr5g2127 591 Pfam Plant invertase/pectin methylesterase inhibitor 68 223 IPR006501 GO:0004857
Tpr5g2127 591 SUPERFAMILY Pectin lyase-like 275 590 IPR011050 -
Tpr5g2127 591 CDD PMEI-like_3 72 228 - -
Tpr5g2127 591 PANTHER PECTINESTERASE 16 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2127 Tpr-Chr5 42027425 42033485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2127 61 591 Carbohydrate Esterase AT3G14310 73.492 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2127 K01051 - pvu:PHAVU_010G123100g 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2127 5 42027425 42033485 Tpr5g2127 5 42027425 42033485 ECH