Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2121 ATGGGTGCAACTGCAATATCAGGAACAAGTGATACATTGGGTGAATCTAATGCAATTGAATTAACAGGAAAAATCATGGTGGTAGCTATAATTTTTCTGTTCATGGTTGTTATGTTTGTTCTAATACTTCATCTTTATGCTAAGTGGTTTTGGTGGCGTTTTGAGGAAAGAACTGTTCCTCAACCACAAAACCGCCGCCGTCGTCGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTCTATGGAACTCACCAAATTGGTCTTGAAGCTTCAATTCTTAAATCTTTGCCTGTTTTGGTTTTCAAACCTGAAGATTTCAAAGATGGTTTAGAATGTGCTGTTTGTCTTTGTGATATTGTTGAAGGAGAAAAAACAAGACTTTTACCAAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTGTTGAATCCTCAAATGGTGAAGAGAAAGAGATGAATGTGTTAGTTTCATCAGAAAATGGTGAAAATTTGAGTCCTATGAATGGTTTAGAGTCTTCAAATTTTCCTACAAATGTTTTGGTTTGGGGGAATCATCAAACACAAGTTAATTCTTTTAGTGTTTGTTTGGATGAAGGAAGTTCTCAACAACAATCTTATTCAACATCATCATCATCATCATGTTCTTTAGATGGTGAAAATGTTAACAATAGTAGATGTAATGGAAATGGAATGTTGGTGATTGATATACCACAAAATGAGTTTAGTTCTTCCTCTTTGTCATCTTTTGATAGTAGATGTGTTGAAGATGAAATGAAATCACCAATGTCATCAAGGTTGAGATCATTTAAGAGGCTTTTAAGTAGGGACAAAAAGTTAAGTCCTTCAAGTCCTAGTTCTATGGATGTTGAACAAGGCTCGAGCTAG 942 0.3535 MGATAISGTSDTLGESNAIELTGKIMVVAIIFLFMVVMFVLILHLYAKWFWWRFEERTVPQPQNRRRRRRRFVFAPGQDPVVYGTHQIGLEASILKSLPVLVFKPEDFKDGLECAVCLCDIVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVESSNGEEKEMNVLVSSENGENLSPMNGLESSNFPTNVLVWGNHQTQVNSFSVCLDEGSSQQQSYSTSSSSSCSLDGENVNNSRCNGNGMLVIDIPQNEFSSSSLSSFDSRCVEDEMKSPMSSRLRSFKRLLSRDKKLSPSSPSSMDVEQGSS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2121 313 SMART ring_2 114 155 IPR001841 -
Tpr5g2121 313 CDD RING-H2_EL5_like 113 156 - -
Tpr5g2121 313 PANTHER RING-H2 FINGER PROTEIN ATL3 9 309 - -
Tpr5g2121 313 MobiDBLite consensus disorder prediction 297 313 - -
Tpr5g2121 313 SUPERFAMILY RING/U-box 94 163 - -
Tpr5g2121 313 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Tpr5g2121 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 160 IPR013083 -
Tpr5g2121 313 Pfam Ring finger domain 113 156 IPR001841 -
Tpr5g2121 313 MobiDBLite consensus disorder prediction 273 296 - -
Tpr5g2121 313 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 309 IPR044675 -
Tpr5g2121 313 MobiDBLite consensus disorder prediction 273 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2121 Tpr-Chr5 41979799 41981497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2121 20 296 C3H Transcription Factor Family AT1G53820 44.518 3.52e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2121 - - cam:101491184 370.163