Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2116 ATGGCTTTGACTCTTGGTAATCGTAGTATGTTTTCAAACATTGATGAAATCAATTCTGATAGAACAAATTGGAATTTTAAGGCAAAGATCATAAGACTTTGGCAAGTGAACGATTTTAATCGACCTAATATGCCTTTTTCTGTTGAAATGGTGTTAATGGATTCAGATGGTTCTAAGATTCATGCCACCATCAAAAAAACACTTATTTACAAGTTTAAACATGATGTAATTGAGGGAAAAGTTTATTCTTTTGAAAATATTGGTGTGGCTGCTAATACTGGAGCTTATAGGACCACACATCATCCATACAAACTGAACTTTCAGTTTGGTTCCATTGTTCAAAGGTTGTCAAATTGTGATATTGTTAAATCTCCATTTACCTTTGTTCCAATTTCTGAAGTTGTAGGTGGCTTATATGACACTGATTTCTTAGTTGATGTGATTGGTCTTTTAACTGAGATTGGTCAGGAACGTGAGATCACTAATCAAAATGGTAGCACAACAAAGCTGAATGTCATTTCCTTGGAGGCTGATGGGCATAAGCTGCAGTGTACACTTTTTGGACCATATGTTGATGAACTGAATACCTTTGTGGGAGCTGGTGATCTAAACAATCATGTGGTCATTGTTCATCTTGCAAAAGCTAAGACCTTTCAAGACAAGATACACATACAGAATTGCATGAATTGTTCTGTTTTGATATTTAACCCAAACTGTGAGGAAAGTAAGATCTTTAGGGCAAGTCTTAATGATTCCGATGAGAATCATTCTCCATTGACCTTTACTCAACTTAGTAATGAGTCAGCTGTGACCCCACTTGATGAGTTTCTGTACAATACTCCAAGGGCAACCTTGCAAGATCTCAAGGATGCTACAAAAGTATCATCACATGTTGTAGCTGCTACTGTGAAGAGAACTTTAAATCCTGATCGTTATTGGTATACAGCATGTTTTTGCGGTAAAGCTGTTATACAAGATTCAAGGTTATGGTTTTGTGAAAAGTGTAATAGGCATGTTCCAAAGGTTGTTCCTAGGTATTGTGTCAAACTTAGAGTCATGGATGATACTGATTCTGCCACGTTTGTTGTTTTTGACAAAGAAGCAAGTGCGATATTTAATATGTCTTGTGCTGATATGCTTCAACTTGGGGATGCTGATGGTGAGCAAATTGTGCCACCTGAAATTGATGACATGCTGGTTAATCATACTTGGCTTTTTATGGTTGAAGCTAAACCTTCTCAGAATCCTAGGTTTGAGCAATCTTTCCGTGTTAGAAAGATTTGTACCGATGAGGTTATAATTAAGCAGTTTAAGGACAAGTGGGATAATGAGGATGCTGTCTGTAATAAAAAAAGAAATGAGGGTGGTTCTTTGAGTACTTTGCTCGATAAGGGGAAAGATGTTTATGTTGGTGGTACCTCTAATTTCCTTTCTGAGGAGTGTCAAAACTTTAGTGGAGATTCTGACAAGGGAAAAGGTTTGATTGTTGATGGAACACCTCTTGAAGTTTCACAAGATTTGATGTTGAAATTTTCAGAATCTATTGTTAATCTTGACGATGATTCTGTTAATACTTCTTTTTGTGTTAAGCCAATGACACCTTGTGTGAGCCCAATGACCTCTACATTGACTGTCAAGCCAATTACATCTGATCCACCTGTGAAGCCAATCAACTTTGTTGCTGCTGTGAACCCAATGCTCTCCGCTGTTTCTGCGAACCCAACTATCTCTGATGTGGTTACTCAACAATCTGCTGCTGCTGTCAAACCAGTAAACTCTACTTCTGGTAATGATGTCAGCATGCGATCTTCATCCTCTGCTCGCCCATGTGGACAGCGGAAGAAATCCTTAGCTAAGAGAGTGTCTCCTCAACATGAGAACACGACGGTTGAAGATGACAATGCTCCTATCAAGTTGTTGAAGAGGGCTGTGAAGATTGAGAAGATACCCTAA 1953 0.3825 MALTLGNRSMFSNIDEINSDRTNWNFKAKIIRLWQVNDFNRPNMPFSVEMVLMDSDGSKIHATIKKTLIYKFKHDVIEGKVYSFENIGVAANTGAYRTTHHPYKLNFQFGSIVQRLSNCDIVKSPFTFVPISEVVGGLYDTDFLVDVIGLLTEIGQEREITNQNGSTTKLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNHVVIVHLAKAKTFQDKIHIQNCMNCSVLIFNPNCEESKIFRASLNDSDENHSPLTFTQLSNESAVTPLDEFLYNTPRATLQDLKDATKVSSHVVAATVKRTLNPDRYWYTACFCGKAVIQDSRLWFCEKCNRHVPKVVPRYCVKLRVMDDTDSATFVVFDKEASAIFNMSCADMLQLGDADGEQIVPPEIDDMLVNHTWLFMVEAKPSQNPRFEQSFRVRKICTDEVIIKQFKDKWDNEDAVCNKKRNEGGSLSTLLDKGKDVYVGGTSNFLSEECQNFSGDSDKGKGLIVDGTPLEVSQDLMLKFSESIVNLDDDSVNTSFCVKPMTPCVSPMTSTLTVKPITSDPPVKPINFVAAVNPMLSAVSANPTISDVVTQQSAAAVKPVNSTSGNDVSMRSSSSARPCGQRKKSLAKRVSPQHENTTVEDDNAPIKLLKRAVKIEKIP* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2116 650 MobiDBLite consensus disorder prediction 619 635 - -
Tpr5g2116 650 CDD RPA1_DBD_A_like 27 113 - -
Tpr5g2116 650 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tpr5g2116 650 SUPERFAMILY Nucleic acid-binding proteins 126 250 IPR012340 -
Tpr5g2116 650 MobiDBLite consensus disorder prediction 587 635 - -
Tpr5g2116 650 Gene3D - 10 115 IPR012340 -
Tpr5g2116 650 CDD RPA1_DBD_B_like 146 241 - -
Tpr5g2116 650 SUPERFAMILY Nucleic acid-binding proteins 280 427 IPR012340 -
Tpr5g2116 650 CDD RPA1_DBD_C 299 411 IPR013955 -
Tpr5g2116 650 Gene3D - 119 261 IPR012340 -
Tpr5g2116 650 PANTHER REPLICATION FACTOR A 1, RFA1 22 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g2116 650 Gene3D - 276 435 IPR012340 -
Tpr5g2116 650 MobiDBLite consensus disorder prediction 587 611 - -
Tpr5g2116 650 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 380 - -
Tpr5g2116 650 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Tpr5g2116 650 Pfam Replication factor-A C terminal domain 300 411 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2116 Tpr-Chr5 41839415 41842271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2116 14 376 Core DNA Replication Machinery Family AT2G06510 22.632 1.01e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2116 - - mtr:MTR_4g036240 589.726