LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2115	ATGGTGATGGAAGTCGTTGAGGTCGATGCTGCAGCCGCCGGAATCCCAAAGAAGAGAACTTTTAAGAAGTTCAGTTACAGAGGTGTTGATTTGGATGCTCTCCTTGACATGTCCGCTGCTGATGTCGTCAAGCTCTTCACCGCTCGTCCTCGTAGAAGGTTCCAAAGAGGTCTCACCAGATTGCCCATGTCTTTAATCAAACGGCTTCGCAAAGCGAAAAGGGAGGCACCACCTGGTGAGAAGCCAGAACCTGTTAGGACCCATCTTCGCAACATGATTATTGTTCCTGAGATGATTGGGAGCATAGTTGGAGTGTACAATGGGAAGACATTTAACCAGGTTGAAATCAAACCTGAGATGATTGGGCATTACCTTGCTGAGTTCTCAATTTCATACAAGCCAGTTAAGCATGGTAGACCCGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA	465	0.4731	MVMEVVEVDAAAAGIPKKRTFKKFSYRGVDLDALLDMSAADVVKLFTARPRRRFQRGLTRLPMSLIKRLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*	155

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2115	154	Pfam	Ribosomal protein S19	52	137	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	PIRSF	RPS19p_RPS19a_RPS15e_RPS19o	11	154	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	ProSitePatterns	Ribosomal protein S19 signature.	107	131	IPR020934	GO:0003723
	Tpr5g2115	154	PANTHER	BNAA03G55820D PROTEIN	4	154	-	-
	Tpr5g2115	154	SUPERFAMILY	Ribosomal protein S19	62	138	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	Gene3D	30s Ribosomal Protein S19; Chain A	11	154	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	PRINTS	Ribosomal protein S19 family signature	87	106	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	PRINTS	Ribosomal protein S19 family signature	107	119	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	PRINTS	Ribosomal protein S19 family signature	119	134	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr5g2115	154	Hamap	30S ribosomal protein S19 [rpsS].	50	143	IPR002222	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2115	Tpr-Chr5	41829344	41831019	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2115	9	154	Cytoplasmic Ribosomal Protein Gene Family	AT5G09500	84.932	5.82e-89	254

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2115	K02958		-	csv:101217711	266.929

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