Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2094 ATGACATTGAACTTGAAGTGTGGCAAGATCTATGCAACTGTTCAAAAGGATTTGCTTACACAGTTCAAGGATGATGTTGAGGATGGTGCTGCTTATGTTGTGGAGAGGTTCATGGTTGTGATATGCCGAAATGAAGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTAAGGATAAGTCTTAAGGATTATAATGCAAAGCTTTCTGATTTTGGGCTGGCAAGGGATGGTCCGAATGACAACGGAAGCCACGTCTCCACCAGGATAATGGGAACCGAGGGATATGCAGATCCCGAATATGTAGACTCGGGCCATCTTACTACTAATAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTAGAAATATTAACTGGTGAGTTGGTACTTGACATGACTAAATATGGAAGAGACAACTTGGTGGAATACATAAAGCCGCACCTGGCCGACAAAACCAAGATTTTTGGTCTGTTGGACAGTGAGCTTAAAGGGCAGTATTAG 501 0.4132 MTLNLKCGKIYATVQKDLLTQFKDDVEDGAAYVVERFMVVICRNEAEKCLIETSINSLRISLKDYNAKLSDFGLARDGPNDNGSHVSTRIMGTEGYADPEYVDSGHLTTNSDVYSFGVVLLEILTGELVLDMTKYGRDNLVEYIKPHLADKTKIFGLLDSELKGQY* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2094 166 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 38 65 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Tpr5g2094 166 Gene3D Transferase(Phosphotransferase) domain 1 24 166 - -
Tpr5g2094 166 Pfam Protein kinase domain 63 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2094 166 PANTHER OS01G0588500 PROTEIN-RELATED 58 166 - -
Tpr5g2094 166 SUPERFAMILY Protein kinase-like (PK-like) 63 134 IPR011009 -
Tpr5g2094 166 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 58 166 - -
Tpr5g2094 166 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2094 166 SUPERFAMILY Arp2/3 complex subunits 25 66 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2094 Tpr-Chr5 41601256 41602987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2094 63 166 Receptor kinase-like Gene Family AT3G58690 54.286 2.81e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr5g2094 Pkinase 8.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2094 - - ath:AT3G28690 142.124