Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2088 ATGGAAATTGGCACATTCCTACTTTGCCATGGCCTACCATTTGTATTGATAATGACAATAATTTCGAGAACAATCAAACAGATCGAGAAACAGACTTGTAATGAGAAAGAAGAGATTGAGGAAGAGAGTGATTCTCAATTGAAACAAACCTATTGTGCAATATGTATGGACGAAAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACACTTTTTGTGAAACTTGTGTTGGAAGTTATCTAGCTGCTAAAATTAAAGAGAATATAGCAATGGTAAAATGTCCTGATCCAAACTGCAACGATATTTTGGAACCTAATGATTGTATTTCAATTATACCAAAAGATGTGTTTGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTGTGACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGTGCACAATGTAAAGTTTCATGGCATGCAGGAGTCGATTGTACGGGGTTTCAAAGCTCAAAAAATGGCGATCAGGGGTGGCAATCAGATCTAACGGCTTTGCAATTTGCTAAGAAAAAGAAGTGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGTGAAGGATGTAATAAAATTACATGCAGGTGTCGTCATCAATTTTGCTATGTTTGTGGATCCGATTGGAAGCCGTCGCATCATGATTGTAAAGAAATTCGATAA 771 0.358 MEIGTFLLCHGLPFVLIMTIISRTIKQIEKQTCNEKEEIEEESDSQLKQTYCAICMDEKPIEEMFENRNCSHTFCETCVGSYLAAKIKENIAMVKCPDPNCNDILEPNDCISIIPKDVFERWENALCENLVLGSQKFYCPFNDCSAMLVNDGNEVVTVSECPHCHRLFCAQCKVSWHAGVDCTGFQSSKNGDQGWQSDLTALQFAKKKKWKRCSKCSFYVERSEGCNKITCRCRHQFCYVCGSDWKPSHHDCKEIR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2088 256 ProSiteProfiles TRIAD supradomain profile. 48 256 IPR044066 -
Tpr5g2088 256 SUPERFAMILY RING/U-box 49 129 - -
Tpr5g2088 256 SUPERFAMILY RING/U-box 196 252 - -
Tpr5g2088 256 Pfam IBR domain, a half RING-finger domain 121 182 IPR002867 -
Tpr5g2088 256 Pfam IBR domain, a half RING-finger domain 203 252 IPR002867 -
Tpr5g2088 256 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 253 IPR031127 GO:0004842|GO:0016567
Tpr5g2088 256 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
Tpr5g2088 256 ProSiteProfiles Zinc finger RING-type profile. 52 97 IPR001841 -
Tpr5g2088 256 SUPERFAMILY RING/U-box 127 186 - -
Tpr5g2088 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 133 IPR013083 -
Tpr5g2088 256 Gene3D - 180 256 - -
Tpr5g2088 256 SMART ibrneu5 120 182 IPR002867 -
Tpr5g2088 256 SMART ibrneu5 193 252 IPR002867 -
Tpr5g2088 256 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 37 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2088 Tpr-Chr5 41485017 41485997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2088 6 243 C3H Transcription Factor Family AT2G19610 29.412 1.76e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2088 K11975 - gmx:100815626 309.301