Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2087 ATGGAAATGGACAAAGCCATTTCCAAATCATTTACTAGCCTTCAAATTAATACCAAATCCAACATTACCAAAGACTCAAACCAAATCAACAAAAAAAAATCAAGCTCTTCTTCAAATAACAAATGGTTGGGTTTCATTTCATGCATTCCATGTTTTACTAGTAATAGAGACTTGAAGAAAAATATTTGTGAGGGCAAGGAGGGAAATTCATCCTCTACAAAACATGAATATCAAAGTTTAGAAGACATTATTTTCCATGATGCTAAAGAAAATATTCCAATATCTAAGGAGACTTTTGAAGGCGAATCTTCTTCATCTCAATTGAAACAATCCTATTGTGCTATTTGCATGGAAGCTAAACATGTTCAAGAAATGTTCGAAAACCGAAAGTGTACACATTCTTTTTGTAAAGATTGTGTTGCAAGTTATCTAGTTGCAAAAATTCAAGAGAATATAGCAAAGATAAAATGTCCTCAACCAAAATGTAAGGTTATTTTGGAGCCTCAAAATTGTATTTCAATTATACCAAAGGATATGTTTGAAAGATGGGAAAATGCAACTATTGAGAATTTGGTGTTAGGATCACAAAAGTTTTATTGTCCTTTTAAGGATTGTTCAGCTATGTTGGTGAATGATGGAAAGAAAGTTGTGACGGCTTCGGAATGTCCGATTTGTCATAGATTGTTTTGTGCACAATGTAAGGTTTCATGGCACGCCGGAGTTAATTGTAAAGAGTTTCGAAGCTTGGAAGTTGGCGAGCGAGGGGCGGAAGATCTAATGGTAATGGAACTTGCTAAGAACAACAATTGGAAAAGATGTCCAAACTGCAGCTTTTATGTGGAAAGAAATAAAGGATGTAATCGCATTCTATGCAGGTGTGGTAATTATTTTTGCTATGGCTGTGGATCCGATTGGAATTATCAAACTGGAAACTCTCCTGCGGAATTTCCTACCAAAAATGAGAATAAATCGGCAGTAAATGTTCCTGCGAAATTTCTGCAGATACTGTGTAAAACAAAGCCAGAAAAAGCAATCAGCAAGAGACAAATACCTAACTGTTGTAAAGAAGCAGCAAGAGACTGTTGTAAAATAAAGCCAGAAAAAGCAATCAGCAATTAG 1119 0.3503 MEMDKAISKSFTSLQINTKSNITKDSNQINKKKSSSSSNNKWLGFISCIPCFTSNRDLKKNICEGKEGNSSSTKHEYQSLEDIIFHDAKENIPISKETFEGESSSSQLKQSYCAICMEAKHVQEMFENRKCTHSFCKDCVASYLVAKIQENIAKIKCPQPKCKVILEPQNCISIIPKDMFERWENATIENLVLGSQKFYCPFKDCSAMLVNDGKKVVTASECPICHRLFCAQCKVSWHAGVNCKEFRSLEVGERGAEDLMVMELAKNNNWKRCPNCSFYVERNKGCNRILCRCGNYFCYGCGSDWNYQTGNSPAEFPTKNENKSAVNVPAKFLQILCKTKPEKAISKRQIPNCCKEAARDCCKIKPEKAISN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2087 372 ProSiteProfiles TRIAD supradomain profile. 109 319 IPR044066 -
Tpr5g2087 372 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 83 308 IPR031127 GO:0004842|GO:0016567
Tpr5g2087 372 Pfam IBR domain, a half RING-finger domain 264 308 IPR002867 -
Tpr5g2087 372 Pfam IBR domain, a half RING-finger domain 182 243 IPR002867 -
Tpr5g2087 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 194 IPR013083 -
Tpr5g2087 372 ProSiteProfiles Zinc finger RING-type profile. 113 161 IPR001841 -
Tpr5g2087 372 SUPERFAMILY RING/U-box 110 190 - -
Tpr5g2087 372 SUPERFAMILY RING/U-box 254 307 - -
Tpr5g2087 372 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 83 308 - -
Tpr5g2087 372 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Tpr5g2087 372 Gene3D - 240 349 - -
Tpr5g2087 372 SMART ibrneu5 181 243 IPR002867 -
Tpr5g2087 372 SMART ibrneu5 253 310 IPR002867 -
Tpr5g2087 372 SUPERFAMILY RING/U-box 189 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2087 Tpr-Chr5 41474814 41478020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2087 78 303 C3H Transcription Factor Family AT2G19610 25.311 2.09e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2087 K11975 - gmx:100815626 318.931