Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2085 ATGTTGCAGTTTCATTCTCAAGGTGCTTCTAAGCAGAATTGTACTGTTCTTGCTGTTACTTCTGCTACAAGTTCTGTTGAGCAGAAGCTGAAGCAGCCACAGAATCATCACATATACCCTTTTCCTGAGTTGGTTTCTTCGGGGCGGCTTGAGGTTCAAACTCTCTGTGATCCGGAAAAGGAACAGTTTCGTAAAGTTCTTGAATCGTATCAGCCGAGTTTTGTTTACTTACAAGGAGAGCAGTTAGTGAATGAGGAAGTTGGTCCACTGGTTTGGCAAGGTGTGGAATTATCCATACCTGAAGATTTATCAGAGCTCTTCGGTACTACATTGCCGACGGTTGTTTATCTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCTCTTCGTCTTAAGGGAATCCCGTATGTTGTATTTTGGAAGAATGCCTTTTCTCAATATGCTGCTTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGTTCCTGTACACATACATGGGATGCTTTCCACCTTGCACATGCCTCTTTCGAACTTTACTGTGTTCAAAACAGTCAAGTACTTCCTAATGATAGCAGTGATGCTGATAGCGATATGGGGCCACACCTTCTTGGGGACTGCCTCAAAATTAATGTTGACCCTCCAGAAATGGGTGAAGAAGATGAAGAAGATGAAGAAAGTTCCTCAGGCAATCTTCCTTCTATACAGATTCATGATGATGAAGTGAATTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTCCAGGCAGCCACTTTTTCACGCGGAGTTGTGACCATGCGATGCGATATATCAACCTGCAGTTCTGCGCATATCTCACTGCTAGTATCTGGCAGTCCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTCGTGCACAACTCAACAGTGAAGCAATGACACAGACTATCTCTGAGCCTCGCAGATCTGCCTCAATAGCTTGTGGAGCAACTATATTTGAAGTTAGCATGAAGCTTCCTCAGTGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTCGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCTTCTTTTGAGAAAGATGATGCCGAGCGCTTACTTTTCTTCTATCAAAGCTCCGAGAAAGATGGATGTGAAAATGGCAATTTAGTTTTCAGCAAGCCCCCCATTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGTGAATCAAGCCAAGGGGATAGCCCTGACATACACGATGGTGTCTTTGCAGGGCAGGGTGCTGTTAAAAATGTAGATGAAGAGGATAAGGATAGGAAGATGGTGAATGGGGTTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGGCACCTTTTCGTGGACCTTCTGACATAAATGGTTTTGGTGGTGCTCATGTTGAAGCTAATGTGCCACTCGTCCCTTTGAAGCGTAGTAGTATTGGATCATCATCTGCCACACAGAGAAAATCATTTTCAAGCTCATCTCATTCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGTAGCAGAGGCCCAGTACAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCTCAAGGAGGGCTTTCCGAGTTTCCTGATGCCATTCTGAATGGCAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGGGAAATTACACATCAACGAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACTTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGCGGCATATGTGGCGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATATATTTGTCCTCATTGTAGTGTTACAAATTTCAAGAAAAAACAAAGTGTTGCCAATGGATATTCTCAAGGGTCAATGTCATCGCGGCCCCTTTGA 2355 0.4369 MLQFHSQGASKQNCTVLAVTSATSSVEQKLKQPQNHHIYPFPELVSSGRLEVQTLCDPEKEQFRKVLESYQPSFVYLQGEQLVNEEVGPLVWQGVELSIPEDLSELFGTTLPTVVYLEIPNGESFAEALRLKGIPYVVFWKNAFSQYAACHFRQAFFSVVQSSCTHTWDAFHLAHASFELYCVQNSQVLPNDSSDADSDMGPHLLGDCLKINVDPPEMGEEDEEDEESSSGNLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKYSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVRAQLNSEAMTQTISEPRRSASIACGATIFEVSMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCENGNLVFSKPPIWLKPPPPTRKRCESSQGDSPDIHDGVFAGQGAVKNVDEEDKDRKMVNGVSTPLTPARQRLKVSAMRPIPHVRRHRMAPFRGPSDINGFGGAHVEANVPLVPLKRSSIGSSSATQRKSFSSSSHSKQVISLNPLPLKKHGCSRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRPL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2085 784 SMART bright_3 599 703 IPR001606 GO:0003677
Tpr5g2085 784 CDD PHD_ARID4_like 708 759 - -
Tpr5g2085 784 Pfam ARID/BRIGHT DNA binding domain 601 698 IPR001606 GO:0003677
Tpr5g2085 784 SUPERFAMILY ARID-like 598 713 IPR036431 GO:0003677
Tpr5g2085 784 MobiDBLite consensus disorder prediction 557 576 - -
Tpr5g2085 784 CDD ARID 600 698 - -
Tpr5g2085 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 774 IPR042293 -
Tpr5g2085 784 Gene3D - 595 701 IPR036431 GO:0003677
Tpr5g2085 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 774 - -
Tpr5g2085 784 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677
Tpr5g2085 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 765 IPR013083 -
Tpr5g2085 784 SUPERFAMILY FYVE/PHD zinc finger 694 762 IPR011011 -
Tpr5g2085 784 SMART ARID_2 595 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2085 Tpr-Chr5 41431346 41440889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2085 4 773 ARID Transcription Factor Family AT3G43240 60.205 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr5g2085 ARID 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2085 - - cam:101514085 1422.53