Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2077 ATGGATACTATGAAATCTTTCAAAGGTTACGGCAAAGTAGACGAAATAGAACAACAAGCATTTAAAAAAAAGACACGTAAGCGCATCACAATCATAATAATCTCCACCGTTATTCTATTAGCGGTTATAATTGCTGCGGTTGCAGGAATCCTCATACACAAGCGCAACACCTCATCATCCTCTTCCTCTGACTCGCTCCCTAAAACTCAGTTAACACCCGCCACTTCACTCAAAGCAGTTTGCGAGGCAACTCAGTACCCTAACTCGTGCTTCTCCGCAATCTCATCTCTTCCAGATTCCAACACTACCGATCCTGAACAACTCTTCAAACTCTCTCTCAAAGTCGCCATTGATGAATTATCAAATCTCACGCGCGGTTTCAGTGATAAAATCAAAGCGAGTGGTGACACGCGCCTTAAGAAAGCGATTGAAGTTTGCGGTTCGGTTTTGAACGATTCGTTAGATCGGCTTAACGATTCAATGTCGACGATTGTTTCCGGTGAGAAGATTCTTTCTCCGACGAAGATTCGTGATGTTGAGACGTGGATTAGTGCGGCGATAACGGATCATGACACGTGTTTAGATGCCGTTGGTGAATTGAACTCAACCGCTGCGAAAAATATTCGTAGTGAAATTGAAACCGCGATGAGAAACTCGACGGAGTTTGCTAGTAACAGTTTAGCGATTGTGACGAAGGTGATTAGACTCTTATCGAATTTCGAGGTTTCGAATCATCACCGGAGATTGCTCGGAGATTTTCCGGAGTGGTTAGGAGCGGCGGAGAGGAGGTTGCTTGCGGCGGAAGGGAATGGGACTACGGTGATACCTGATACGCCGGATGCGGTTGTGGCGAAGGATGGAAGTGGTCAGTATAAGACGATTGGGGAGGCGTTGAAGATTGTACCGAAGAAGAGTTTGAAGAGATTTGTGGTGTATGTGAAGAAAGGAGAATATGTAGAGAATATTGATTTGGATAAGAATACATGGAATGTGATGATTTACGGCGACGGTATGACGGAAACCGTCGTAAGTGGTAGCCGGAATTTCATGGATGGCACACCTACGTTTGAAACTGCAACTTTTGCTGTTAAAGGTAAGGGATTCATTGCTAAAGACATACAATTCAAGAACACAGCAGGTGCATCTAAGCACCAGGCTGTGGCATTACGATCCGGCTCGGATGAATCTGTGTTCTATAGGTGTTCATTTGTGGGATTTCAGGATACCCTTTATGCACATTCAAACCGTCAATTCTACCGCGACTGTGACATTACAGGTACAATAGACTTCATATTCGGAAACGCAGCTGTTGTGTTCCAAAATTGCAAAATCATGCCTAGGCAACCAATGGCAAACCAGTTCAACACCATCACAGCTCAGGGTAAGAAGGATCCTAATCAAAACACTGGAATTGTGATCCAGAAATCAACTATCACTACACTACCTAATGATAATCTCATAGCACCTACTTACCTTGGTAGACCATGGAAAGATTTCTCCACTACTATTATCATGAAATCACAGATTGGATCATTCTTGAAACCAGTAGGGTGGATAAGTTGGGTTTTCAATGTGGATCCTCCAAGTAGCATCCTCTATGCTGAATACCAGAACACTGGGCCAGGAGCAGCAGTAGACCAGAGAGTCAAATGGGCCGGTTATAAGTCCGCTCTCGAAGACGGAGAAGCTCTGAAGTTCACTGTGGATTCCTTTATCCAGGGTCCGGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGATTCTACCTTGTAA 1770 0.4441 MDTMKSFKGYGKVDEIEQQAFKKKTRKRITIIIISTVILLAVIIAAVAGILIHKRNTSSSSSSDSLPKTQLTPATSLKAVCEATQYPNSCFSAISSLPDSNTTDPEQLFKLSLKVAIDELSNLTRGFSDKIKASGDTRLKKAIEVCGSVLNDSLDRLNDSMSTIVSGEKILSPTKIRDVETWISAAITDHDTCLDAVGELNSTAAKNIRSEIETAMRNSTEFASNSLAIVTKVIRLLSNFEVSNHHRRLLGDFPEWLGAAERRLLAAEGNGTTVIPDTPDAVVAKDGSGQYKTIGEALKIVPKKSLKRFVVYVKKGEYVENIDLDKNTWNVMIYGDGMTETVVSGSRNFMDGTPTFETATFAVKGKGFIAKDIQFKNTAGASKHQAVALRSGSDESVFYRCSFVGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPMANQFNTITAQGKKDPNQNTGIVIQKSTITTLPNDNLIAPTYLGRPWKDFSTTIIMKSQIGSFLKPVGWISWVFNVDPPSSILYAEYQNTGPGAAVDQRVKWAGYKSALEDGEALKFTVDSFIQGPEWLPNAAVQFDSTL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2077 589 Pfam Pectinesterase 280 574 IPR000070 GO:0030599|GO:0042545
Tpr5g2077 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 233 IPR035513 -
Tpr5g2077 589 Gene3D - 277 589 IPR012334 -
Tpr5g2077 589 PANTHER PECTINESTERASE 1-RELATED 8 586 - -
Tpr5g2077 589 Pfam Plant invertase/pectin methylesterase inhibitor 77 229 IPR006501 GO:0004857
Tpr5g2077 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 233 IPR035513 -
Tpr5g2077 589 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Tpr5g2077 589 SMART PMEI_2 72 229 IPR006501 GO:0004857
Tpr5g2077 589 SUPERFAMILY Pectin lyase-like 279 586 IPR011050 -
Tpr5g2077 589 PANTHER PECTINESTERASE 8 586 - -
Tpr5g2077 589 CDD PMEI-like_3 79 232 - -
Tpr5g2077 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2077 Tpr-Chr5 41301202 41304827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2077 1 583 Carbohydrate Esterase AT1G53840 58.569 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2077 - - gmx:100784642 854.358