LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2076	ATGATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAACAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCCATTATTGCCATTGTTGCATCAACAACAAAAAATTCCAACAAAACCAAAAACAACAACATTTCTTCATCTTCTCTTTTACTCTCTCACCATTCACACACCATTATCAAAAAAGCTTGCACAACCACACTCTACCCTGAACTCTGTTTCTCAGCCTTAGCCTCTGAGCCAAACATAACTCACAAAGTCACAAACCACAAAGATGTAATTTCATTGTCTCTTAACATCACAAAGAGAGCCGTTGAACACAATTACTTCACCGTCGAAAAACTTCTCTTGCGAAAAACTCTCACAAAAAGAGAGAAAACTGCTCTTCATGATTGTTTAGAAACCATTGATGAAACACTAGATGAACTCAAAGAAGCAGAGGATGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACGCTCATAAGCTCCGCCATTACCAACCAGGTAACTTGTTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGTTCTAGAAGCAGGACAAGTCCACGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCTGAATTTGAACAAACCAATACGGTGTTAGGAAGTGGAAAAAACAATAGAAAATTATTGGAAGACGAAAATGGGGTGCAGTGGCCGGAGTGGATGTCAGTAGGGGACAGGAGGCTACTTCAAGGGGCAGCGGTGAAAGCGGATGTGGTTGTGGCAGCGGACGGAAGTGGGAACTTTAAGACGGTGTCCGAGGCTGTGGCTGCTGCTCCTTTAAAGAGTAGCAAGAGATTTGTTATTAAGATAAAAGCTGGGGTGTATAAAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAAGTAATACTATTATTACCGGTAGTAGAAATGTTGTTGATGGAAGCACCACTTTTCACTCAGCTACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCTGGCCCTTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATTATAGCATACCAAGACACACTTTATGTTCACAACAATAGACAATTTTTTGTAAATTGTTTCATCTCTGGTACCGTTGATTTCATCTTTGGCAATGCAGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCTGATTCAGGACAAAAAAATATGGTCACGGCGCAAGGTAGAGTTGATCCTAATCAAAACACCGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAGAACAATTTTCCTACTTTTCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGTATTAGTGATGTTATTCAACCTGTTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGAGCTGGTGCTGGTACTTCTAATAGGGTTACTTGGAAAGGATTTAAGGTCATTACTAGTGCTTCTGAGGCCCAAAGTTTTACTGCTGGAAGTTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA	1776	0.3992	MMNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIIAIVASTTKNSNKTKNNNISSSSLLLSHHSHTIIKKACTTTLYPELCFSALASEPNITHKVTNHKDVISLSLNITKRAVEHNYFTVEKLLLRKTLTKREKTALHDCLETIDETLDELKEAEDDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKVLEAGQVHVEHMCSNALAMIKNMTDTDIAEFEQTNTVLGSGKNNRKLLEDENGVQWPEWMSVGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYKENVDVPKKVTNIMFLGDGRSNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTFLGRPWKEYSRTVIMQSSISDVIQPVGWHEWNGNFALNTLVYREYQNTGAGAGTSNRVTWKGFKVITSASEAQSFTAGSFIGGSSWLGSTGFPFSLGL*	592

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2076	591	Gene3D	Invertase/pectin methylesterase inhibitor family protein	64	228	IPR035513	-
	Tpr5g2076	591	PANTHER	PECTINESTERASE	16	590	-	-
	Tpr5g2076	591	SMART	PMEI_2	64	223	IPR006501	GO:0004857
	Tpr5g2076	591	Coils	Coil	138	158	-	-
	Tpr5g2076	591	Pfam	Plant invertase/pectin methylesterase inhibitor	68	223	IPR006501	GO:0004857
	Tpr5g2076	591	ProSitePatterns	Pectinesterase signature 2.	424	433	IPR033131	-
	Tpr5g2076	591	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	68	228	IPR035513	-
	Tpr5g2076	591	CDD	PMEI-like_3	72	228	-	-
	Tpr5g2076	591	Pfam	Pectinesterase	280	576	IPR000070	GO:0030599\|GO:0042545
	Tpr5g2076	591	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	58	227	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2076	Tpr-Chr5	41285089	41291695	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2076	61	591	Carbohydrate Esterase	AT3G14310	72.943	0.0	820

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2076	K01051		-	gmx:100776623	900.582

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