Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2072 ATGGGTGCAACTGCAATATCAGGAACAAGTGATACATTGGGTGAATCTAATGCAATTGAATTAACAGGAAAAATCATGGTGGTTGCTATAATTTTTCTGTTCATGGTTGTTATGTTTGTTCTAATACTTCATCTTTATGCTAAATGGTTTTGGTGGCGTTTTGAGGAAAGAACAGTTCCTCAACCACAAAACCGCCGTCGTCGTCGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTCTATGGAACTCACCAAATTGGTCTTGAAGCTTCAATTCTTAAATCTTTGCCTGTTTTGGTTTTCAAACCTGAAGATTTCAAAGATGGTTTAGAATGTGCTGTTTGTCTTTGTGATATTGTTGAAGGAGAAAAAACAAGACTTTTACCTAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTGTTGAATCCTCAAATGGTGAAGAGAAAGAGATGAATGTGTTAGTTTCATCAGAAAATGGTGAAAATTTGAGTCCTATGAATGGTTTAGAGTCTTCAAATTTTCCTACAAATGTATTGGTTTGGGGGAATCATCAAACACAAGTTAATTCTTTTAGTGTTTGTTTGGATGAAGGAAGTTCTCAACAACAATCTTATTCAACATCATCATCATCATGTTCTTTAGATGGTGAAAATGTTAACAATAGTAGATGTAATGGAAATGGAATGTTGGTGATTGATATACCACAAAATGAGTTTAGTTCTTCCTCTTTGTCATCTTTTGATAGTAGATGTGTTGAAGATGAAATGAAATCACCAATGTCATCAAGGTTGAGATCATTTAAGAGGCTTTTAAGTAGGGACAAAAAGTTAAATCCTTCAAGTCCTAGTTCTATGGATGTTGAACTAGGCTCGAGCTAG 939 0.3504 MGATAISGTSDTLGESNAIELTGKIMVVAIIFLFMVVMFVLILHLYAKWFWWRFEERTVPQPQNRRRRRRRFVFAPGQDPVVYGTHQIGLEASILKSLPVLVFKPEDFKDGLECAVCLCDIVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVESSNGEEKEMNVLVSSENGENLSPMNGLESSNFPTNVLVWGNHQTQVNSFSVCLDEGSSQQQSYSTSSSSCSLDGENVNNSRCNGNGMLVIDIPQNEFSSSSLSSFDSRCVEDEMKSPMSSRLRSFKRLLSRDKKLNPSSPSSMDVELGSS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2072 312 SMART ring_2 114 155 IPR001841 -
Tpr5g2072 312 Pfam Ring finger domain 113 156 IPR001841 -
Tpr5g2072 312 MobiDBLite consensus disorder prediction 292 312 - -
Tpr5g2072 312 CDD RING-H2_EL5_like 113 156 - -
Tpr5g2072 312 PANTHER RING-H2 FINGER PROTEIN ATL3 9 303 - -
Tpr5g2072 312 SUPERFAMILY RING/U-box 94 163 - -
Tpr5g2072 312 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Tpr5g2072 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 160 IPR013083 -
Tpr5g2072 312 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 303 IPR044675 -
Tpr5g2072 312 MobiDBLite consensus disorder prediction 296 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2072 Tpr-Chr5 41242201 41243894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2072 20 298 C3H Transcription Factor Family AT1G53820 43.949 9.50e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2072 - - cam:101491184 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2072 5 41242201 41243894 Tpr5g2072 5 41242201 41243894 ECH