Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2071 ATGTCAACAAAAACCATCCTAAAATTCTTCACAATGATTGCATTCATGGCAAATTCATTTCAAGAAAACATATTCAAGATTCTTCATAAACTCTACAACAATAATCATTTCTATGTTGGTAATTCAATGAAGGAAATAGATCAAAGTGAAAGTGAATGTTGTTCAGTTTGTTTAAGCCAAATGTGTAAAGGAGAAAAAGTTAGATTATTACCTTTATGTAATCATAGATATCATTCTGATTGTATTGGTGTTTGGTTGAAGAATAATACTACATGTCCTCTTTGTAGAAGCAAAATCATTGACCATAGTATTAATCAGAATCAGCAAAAACAGGTTAAGCCTTTTGGAGAATCTATGGTTGGTCTTATACAAAGTTTCTCTGATGTAATTGTAGCTATTCTTTATATGATTCTTCCTTCTAGTATCACTGAAAGTTTCCCTATTGTTCATTGA 453 0.3002 MSTKTILKFFTMIAFMANSFQENIFKILHKLYNNNHFYVGNSMKEIDQSESECCSVCLSQMCKGEKVRLLPLCNHRYHSDCIGVWLKNNTTCPLCRSKIIDHSINQNQQKQVKPFGESMVGLIQSFSDVIVAILYMILPSSITESFPIVH* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2071 150 CDD RING-H2_PA-TM-RING 53 96 - -
Tpr5g2071 150 ProSiteProfiles Zinc finger RING-type profile. 54 96 IPR001841 -
Tpr5g2071 150 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 47 111 IPR044675 -
Tpr5g2071 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 101 IPR013083 -
Tpr5g2071 150 Pfam Ring finger domain 54 96 IPR001841 -
Tpr5g2071 150 SMART ring_2 54 95 IPR001841 -
Tpr5g2071 150 SUPERFAMILY RING/U-box 42 102 - -
Tpr5g2071 150 PANTHER RING-H2 FINGER PROTEIN ATL2 47 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2071 Tpr-Chr5 41220831 41221421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2071 54 99 C3H Transcription Factor Family AT1G53820 52.174 3.57e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2071 - - cam:101495833 211.846