Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2064 ATGGCGATCGATAATGAAGAGCTCAAGGACGAAAAGAATCCTCGCCGACTCGACGAGGACGACATCGCTCTTCTAAAAACCTATGGTTTGGGACCTTATTCCACAGGCATAAAAAAAGTGGAGAAGGAAATCAAAGATATGGCAAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTTGCAAGATGCACAAAAATTATAAATCCAAACTCCGAGGATGCCAAATATGTTATCAATGTGAAGCAGATTGCTAAGTTTGTTGTTGGGCTCGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGAATGCGTGTTGGTGTTGATAGAACCAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACAATGATGACAGTTGAAGAGAAACCAGACGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAGAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGAATTGATCCACCAAAGGGTGTGCTTTGTTATGGTCCACCAGGAACTGGCAAAACACTTCTAGCCAGGGCTGTTGCTAATAGAACTGATGCCTGTTTTATTAGGGTCATTGGAAGTGAACTAGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGGTTCGTGAGCTATTTCAGATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGATTTGATGATGGTGTTGGTGGTGATAACGAGGTTCAGAGAACAATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACAAACAGGCCCGACACTCTGGACCCAGCACTATTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACACAGATATTCAAGATTCACACAAGAACCATGAACTGTGAAAGGGATATCCGTTTTGAACTTCTAGCCCGGCTTTGCCCAAACTCTACTGGAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTTTGCTATCCGCGCCCGAAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTGAATAAAGTTATCAAAGGGTACCAGAAGTTCAGTGCCACTCCCAAATATATGGTCTACAATTGA 1278 0.4304 MAIDNEELKDEKNPRRLDEDDIALLKTYGLGPYSTGIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRTKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2064 425 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 97 408 IPR005937 GO:0005737|GO:0030163|GO:0036402
Tpr5g2064 425 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 6 423 - -
Tpr5g2064 425 Pfam AAA+ lid domain 359 402 IPR041569 -
Tpr5g2064 425 ProSitePatterns AAA-protein family signature. 307 325 IPR003960 GO:0005524|GO:0016887
Tpr5g2064 425 Pfam ATPase family associated with various cellular activities (AAA) 204 336 IPR003959 GO:0005524|GO:0016887
Tpr5g2064 425 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 423 - -
Tpr5g2064 425 Gene3D - 338 419 - -
Tpr5g2064 425 SMART AAA_5 200 339 IPR003593 -
Tpr5g2064 425 CDD AAA 170 337 - -
Tpr5g2064 425 Gene3D - 157 336 IPR027417 -
Tpr5g2064 425 Gene3D - 32 156 IPR012340 -
Tpr5g2064 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2064 Tpr-Chr5 41164400 41167818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2064 169 390 Calmodulin-binding Proteins AT3G56690 37.220 1.32e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2064 K03061 - gmx:100820271 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2064 5 41164400 41167818 Tpr5g2064 5 41164400 41167818 ECH
Tpr5g2064 5 41164400 41167818 Tpr7g0508 7 4286666 4289236 ECH