Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2016 ATGATCTTGACTCTGAGCATTATCACGAGAAAATGCCTCATGATAGAGTGTCTCATGTTGATTCACAAAATACAGATCTGGAATGGTGGGATACTCAAGAGCGGGATGATCAGGGAGATTTTGCTGATGAATCTGGACAAATTGGTCCTCGTGCTTCGTGTCGTTGTCAGGTTATTAGAAGCGTCAGTCAATGGTCCGCCAGAACAAGTCAAACTGAAGAGAGCATCCACCATGCTTATTGCTCTCATTGAGAAAGCTGAATACTTCATCTACATCGAGAGCCAGTTTTTTATCTCGGGTCTTTCTGGAGATGATATGATACGTAATCGTGTGTCAGAAGCTTTATATCGGCGGATTATGCGAGCTTATAATGAAAAAAAATCTTTTAGGGTTATAATCGTCATACCGCTCCTGCCTGGCTTCCAGGGGGGGATTGATGATGGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCAGAGGGCCGCATTCTATCTTACATAATCTTCATGAGCTTCTTGGTTCAAGAGTACATGACTACATCTCTTTTTATGGTCTAAGGAATTATGGTAGACTCTCTGATGGTGGTCCTGTGGCAACCAGCCAGGTATACGTTCATAGTAAAATCATGATTATTGATGATTGTATTAGTTTGATTGGATCTGCTAATATTAATGATAGAAGCTTACTCGGCTCCAGGGACTCTGAGATTGGTGTAGTTATAGAAGACAAAGAGTTGACTGATTCTTATATGGATGGAAAGCCTTGGAAGGCAGGGAAGTTTTCTTTGACTCTTCGATTAGCATTATGGTCTGAACACTTGGGTCTCCCGGCAGGAGAGGTCAATCAAATAATGGACCCAATTGTTGATTCTACATACAAGGATATTTGGATGACAATAGCAAAGGTAATAAGAAAGATTAAGGGTGTATGTTTATTACTAATTTGA 966 0.4099 MILTLSIITRKCLMIECLMLIHKIQIWNGGILKSGMIREILLMNLDKLVLVLRVVVRLLEASVNGPPEQVKLKRASTMLIALIEKAEYFIYIESQFFISGLSGDDMIRNRVSEALYRRIMRAYNEKKSFRVIIVIPLLPGFQGGIDDGGAASVRAIMHWQYRTICRGPHSILHNLHELLGSRVHDYISFYGLRNYGRLSDGGPVATSQVYVHSKIMIIDDCISLIGSANINDRSLLGSRDSEIGVVIEDKELTDSYMDGKPWKAGKFSLTLRLALWSEHLGLPAGEVNQIMDPIVDSTYKDIWMTIAKVIRKIKGVCLLLI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2016 321 Pfam PLD-like domain 79 256 IPR025202 -
Tpr5g2016 321 PANTHER PHOSPHOLIPASE D 80 309 IPR015679 -
Tpr5g2016 321 PANTHER PHOSPHOLIPASE 80 309 - -
Tpr5g2016 321 Gene3D Endonuclease Chain A 52 268 - -
Tpr5g2016 321 SMART pld_4 207 234 IPR001736 GO:0003824
Tpr5g2016 321 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 207 234 IPR001736 GO:0003824
Tpr5g2016 321 SUPERFAMILY Phospholipase D/nuclease 72 281 - -
Tpr5g2016 321 CDD PLDc_vPLD1_2_yPLD_like_2 80 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2016 Tpr-Chr5 40323073 40329870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2016 81 308 Phospholipase D Gene Family (Wang group) AT3G05630 71.053 2.33e-109 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2016 K01115 - gmx:100780514 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2016 5 40323073 40329870 Tpr5g2016 5 40323073 40329870 ECH