Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2003 ATGGGAGTAATACATAACAATGTTGTTTGTGACCAAAGGAAAAGGTTTGCACTTCTTGGTATATCTTCCATACTTTTTGTCGCTATGATCGGTACGGTCGCTGGACAACAAAATAGCGTAGAAATGCTTTGTCAATCAACACAATACCAAGAAACATGTCACAAGAGTCTCGAAAAAGCACCAAGCGATACAACCGATATGAAAGCGCTTCTTAAAGCTGCATTCAATGCAACCATTGACGAGTTATCGAAACATATCAACAATACATCTCTTTATCAAGAATTGGCAAAAGACAACATGACAAAACAAGCAGTTGAAGTTTGTAATGAAGTGTTGGATTATGCTGTTGATGGAATGCATAAATCTGTCGGTACATTAGATAAATTTGATGTCAATAAGGTTAATGAATATGCTTATGATCTTAAAGTTTGGTTAACTGGTACACTTTCACATCAACAAACATGTTTAGATGGTTTCGAGAATTCGAAAACACAAGCCGGCGAACACATGGCTAAGGTTTTGAACACTTCTATGGCATTAAGTAGTAATGCTATTGACATGCTTAGTGCTGTTTCTGGCTTACTTAATAATTTTAATACAAACACACACAACAGGAAACTTTTGTCACTTGTCGATGGTTATCCTTCGTGGGTTAGCGAAGGACAACGACGTCTTCTTGCCGATGATAATGTTAAACCTAATGCTGTTGTTGCTCAAGATGGTAGTGGACAGTTTAAGACATTAACTGATGCTCTTAAGACTGTTCCTGCTAATAATGCACAACCTTTTGTGATTCATGTTAAGGAAGGTGTTTATACGGAGACTGTTAATGTGGCTAAGGAAATGACTTATGTTACTATCATTGGTGATGGTCCTACAAAGACTAAATTCACTGGTAGCCTTAACTTTGCTGATGGTTTACTACCTTACAACACCGCAACCTTCGGTGTTAATGGTGCAAACTTCATTGCAAAGGATGTTGGCTTCGAAAACACAGCAGGAGCAGAAAAACATCAAGCAGTTGCACTCCGAGTAACAGCAGATCAAGCAATCATCTACAACTGTCAAATAGACGGTTACCAAGCCACACTCTTCACCGAATCCCAACGTCAATTCTTCCGTGACTGCAGTATCTCCGGCACAATTGACATGGTCTTCGGTGATGCCTTCGGAATTTTCCAAAACTGCAAACTAATCATAAGAAAACCATTAGACGACCAAAAATGCAACGTAGCCGCCAACGGAAGAACCAAAGCCGATAGCGCAAGTGGTTTTGTTTTCCAAAGTTGTAAATTCACAGGTGAACCAGATGTAGCCAAGATTGATCCCAAAATATCATACCTAGGAAGACCATGGAAGGCATATTCCAAAGTTGTTATCATGGATTCAGACATTGATGCCATTTTCAACCCTGAAGGTTACTTGCCATGGATGGGAAGTGCTTTTACTGATACATGTACTTTCTATGAGTATAATAACAAAGGTGATGGTGCCGATACATCAAAGAGAGTTAAATGGCCTGGTGTTAAGACTATTACAGCTACTGAAGCAGCTGCTTATTACCCTGGCAAATTCTTTGAGCTTGCTAACTCCTCTGATAAGGATTCTTGGATTGTGAAATCTGAGGTTCCTTATGCACTTGGTCCTTTAGATGCTAAAACTAATCCTCTTGATCCTACTGGTGGTCATGGAACTGGAGCCGGAGCCGGAGCTGGAGCAAAGAGTAGTGGTTTTGTCAACAAAGGTAATATTTGGCTTCAAGTGATTCTTTTGGTTGGGATATTTTCACTATCATCATCTTCATTCAACTTGTTCTCACAGTAG 1824 0.3958 MGVIHNNVVCDQRKRFALLGISSILFVAMIGTVAGQQNSVEMLCQSTQYQETCHKSLEKAPSDTTDMKALLKAAFNATIDELSKHINNTSLYQELAKDNMTKQAVEVCNEVLDYAVDGMHKSVGTLDKFDVNKVNEYAYDLKVWLTGTLSHQQTCLDGFENSKTQAGEHMAKVLNTSMALSSNAIDMLSAVSGLLNNFNTNTHNRKLLSLVDGYPSWVSEGQRRLLADDNVKPNAVVAQDGSGQFKTLTDALKTVPANNAQPFVIHVKEGVYTETVNVAKEMTYVTIIGDGPTKTKFTGSLNFADGLLPYNTATFGVNGANFIAKDVGFENTAGAEKHQAVALRVTADQAIIYNCQIDGYQATLFTESQRQFFRDCSISGTIDMVFGDAFGIFQNCKLIIRKPLDDQKCNVAANGRTKADSASGFVFQSCKFTGEPDVAKIDPKISYLGRPWKAYSKVVIMDSDIDAIFNPEGYLPWMGSAFTDTCTFYEYNNKGDGADTSKRVKWPGVKTITATEAAAYYPGKFFELANSSDKDSWIVKSEVPYALGPLDAKTNPLDPTGGHGTGAGAGAGAKSSGFVNKGNIWLQVILLVGIFSLSSSSFNLFSQ* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2003 607 CDD PMEI-like_3 43 193 - -
Tpr5g2003 607 Gene3D - 231 550 IPR012334 -
Tpr5g2003 607 SMART PMEI_2 35 187 IPR006501 GO:0004857
Tpr5g2003 607 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857
Tpr5g2003 607 SUPERFAMILY Pectin lyase-like 232 526 IPR011050 -
Tpr5g2003 607 Pfam Pectinesterase 234 525 IPR000070 GO:0030599|GO:0042545
Tpr5g2003 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 191 IPR035513 -
Tpr5g2003 607 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 187 IPR006501 GO:0004857
Tpr5g2003 607 PANTHER PECTINESTERASE 36 552 - -
Tpr5g2003 607 PANTHER PECTINESTERASE 36 552 - -
Tpr5g2003 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2003 Tpr-Chr5 39940036 39943076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2003 39 545 Carbohydrate Esterase AT5G49180 45.857 2.46e-170 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2003 K01051 - gmx:100784682 768.074