Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2000 ATGGAGAAAAACGAAGACCCAATTCCCAAATTCAACAAAGAAAATTCAAACTCAAACCCACCTAACGATTTCAATTCAAAAAGTTTCAATCTCAACGGCAAAATCATGCTCTGTGCAATAGTTCTTCTCTTCTTCGTCATCGTTGTAATGCTTTGTCTCCATGTTTACGCTCGTTGGTATCTTATGCAATCTCGCCGCCGTCGTAACCGTCTCCGCCGTCGTACTCAGCTAGTTTTCTTCACCGATAATCCAACAACAACCACCGCGGTTTCTTCCGTCGTTACTTCACGTGGTCTTGAAGCTTCAGTTATCGCCTCGCTTCCTTTGTTCTTCTATGATCCGAAAACTCAACCGGAGAATTCATCGGAATGTGCTGTTTGTTTATCGGAATTTGAATCCGGTGAAACGGGTCGGGTTTTACCGAAATGTAAACATAGTTTTCATATCGAGTGTATTGATATGTGGTTTCATTCTCATTCCACGTGTCCACTTTGTCGTGCAGCGGTGGAACCCGCTTCGGAATGTCAAACCCGACCCGAATTTGTTATAAATGTTTGTGAACCGGAAAGTGGGTCGAGTTCGAGTTCCGGTTCGGGTTTAGAAGATCAGAATGAGAACCGAACCGGTAAAGAGGTTTGTTCGAGTTCGGTTGGGTTAAGGAGAAAACCGTCTTTTACGGGTGTGACAATTGAGATACCTTCGAGGAACGAGTTGTGTTGTGACTCGCCGTCATCGACTCAGTCGTCGTTTCGTTCACCAATGAGTAGGATGTTGTCGTTTAAGAGGATTCTTAGTATGGATTGGAAAGGAAGTGTTTCTCCTTCGTCGTATGGCGGCGGTGGTTGTAGCTCGGTGGCTGAGTTAAAAGTAGAACAAGGTGAGCGAGTTGAGACTCAGTGA 900 0.4489 MEKNEDPIPKFNKENSNSNPPNDFNSKSFNLNGKIMLCAIVLLFFVIVVMLCLHVYARWYLMQSRRRRNRLRRRTQLVFFTDNPTTTTAVSSVVTSRGLEASVIASLPLFFYDPKTQPENSSECAVCLSEFESGETGRVLPKCKHSFHIECIDMWFHSHSTCPLCRAAVEPASECQTRPEFVINVCEPESGSSSSSGSGLEDQNENRTGKEVCSSSVGLRRKPSFTGVTIEIPSRNELCCDSPSSTQSSFRSPMSRMLSFKRILSMDWKGSVSPSSYGGGGCSSVAELKVEQGERVETQ* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2000 299 MobiDBLite consensus disorder prediction 192 215 - -
Tpr5g2000 299 CDD RING-H2_EL5_like 123 166 - -
Tpr5g2000 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 174 IPR013083 -
Tpr5g2000 299 MobiDBLite consensus disorder prediction 192 213 - -
Tpr5g2000 299 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Tpr5g2000 299 SUPERFAMILY RING/U-box 105 175 - -
Tpr5g2000 299 PANTHER RING-H2 FINGER PROTEIN ATL64 26 223 - -
Tpr5g2000 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 26 223 - -
Tpr5g2000 299 Pfam Ring finger domain 123 166 IPR001841 -
Tpr5g2000 299 SMART ring_2 124 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2000 Tpr-Chr5 39871527 39872914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2000 4 274 Rapid Response to Elicitors AT3G16720 48.432 1.89e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2000 - - lja:Lj6g3v1468220.1 312.768