Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1968 ATGAAACCTTATCAGTTTTCATCACATAATAATCTTTCAACCATGTCTTCTTTTTCATCTTCATGGCTTACTTCACCTTCATGCACTCTTATAGATTCATCTTCATCTACACCAAACCTCATACTTCAATGGCTAACCTTTCTTTTCCTATCTCCATGTCCTCAAAGAGTCCTTGTTTCTGCTCTTGATTTCTTGTTTTTGCTCTCACTCTTAGCTTTTGCAGCTCATAAGCTCTACTCAAGGTTCAATTCAAGAACAAACTCTAACTCCTCAATCACAAAACCACTTTTGCAGGAGAAAGATTCTGATTATAGAATCACTTTTTGGTTCAAATTACCTTTGTTGGTAACTATCCTTTTGGCTTTAACTTATACTGTTTTAGGAATCTTGGCTCTTACTCAAACAAAAGCTTCTTCATGGAAACAAATAGAATCACTTTTTCGGTTGTTTCAAGCAATAGTTAACATAGTGATAGTGATTCTATTAGTACATGAGAAAAAGTTCAAAGCTTCTAAACACCCTTTATCAGTGAGAATTTATTGGATAGGAAACTTTGTGATTTCTACTTTGTTTGCTGTTTCGGCTATTGTTCGAATGATAACTGTTGGTGAACAAAGTTTGGAGATTAGTTTGAGAATAGATGATATATTCTCATTGGTTAATCTTCCATTATCTTTGTTGTTTTTTGTGATAGCTATAAAAGGTTCATCAGGGATTCATGTGATAAGAATATCTGATGTAGTAGTATCAACATATCGATCGGTTTCAACCGATAGAACTTTGAGTCCTTATGCTTGTTCTTCATTTTTGTCCAAAACAGTTTGGTATTGGATGAATCCTTTAATCAATAAAGGTTACAAAGAACCCCTTAAACTAGAAGATGTTCCTTCACTTCCTCTTGATTTTAGAGCTGAAAAAATGTCAGAACTTTTTCAAAATAATTGGCCTAAACCAGAAGAAAACAGTAAACATCCAGTTGGATTAACCCTTTTTCGGTGTTTTTGGAAACAATTAGCTTTTACCGGTTTCCTTGCAATCATTAGGCTTTGTGTTATGTATGTCGGTCCATTGTTGATTCAAAGTTTTGTTGATTTCACATCAAGGAAAGATAGTACTGCTAGTGAAGGTATTGTTTTGATATTGATCCTTTTTGCAGCGAAATCGGTTGAAGTACTTAGTGTTCATCAATTCAACTTCCATTCTCAGAAACTCGGTATGCTTATTCGTTCGAGCATAATCACTTCGGTTTACAAAAAGGGTTTAAGGTTGTCAAGTTCTTCAAGACAAGCTCATGGAACTGGACAGATTGTTAACCACATGGCTGTTGATGCTCAACAACTCTCCGATTTGATGATGCAGTTTCATCCTATATGGTTGATGCCATTACAAGTTGCTGCAGCATTGGCTCTTATGTATAGCTATGTCGGTATATCTGTTCTTGCAGCATTGCTTGGAACAAGCATTGTGTTTCTCTTCACGCTTTATCGAACCAAAAGTAGTAATAGTTTCCAGTTTCGGATAATGACTAGCCGTGATTCAAGGATGAAGGCGACAAATGAGTTGCTTAATAATATGCGTGTGATTAAGTTTCAAGCTTGGGAAGAGTACCTTGGTAACAAAATTCAAAAGTTTCGTGAAACCGAGCATGGATGGATTGGCAAATTCTTGTACTATTTTGCTGTTAACATGGGAGTTTTGTCTACTGCTCCATTAGCCGTAACTGTTCTTACCTTTGGAACTGCAACTTTTATTGGAATGCCTTTGGATGCTGGCACGGTTTTCACAATAACTTCGATTATCAAGATACTTCAAGAGCCTGTGAGGACTTTTCCTCAAGCTCTTATCAATATTTCTCAAGCAACAATTTCTTTAGGGAGGTTGGATGCATTCATGAGTAGTACGGAAATGGATGTGAATGCAGTGCAAAGAGAGGAGAATTGTGATGGTGACATAGCTGTCGAGATAAAAGATGGGAAATTTTCTTGGGATGATAAGGATGAGAATGTAGCTTTGACAGTTGATGACTTGGTAATTAAGAAAGGGGATCATGCTGCTGTTGTAGGAACTGTTGGTTCCGGCAAGTCTTCGTTACTGGCTTCTGTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTTAGAGTATGTGGGACGACATCGTATGTAGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGCTTACCATTGAATATAGAAAAGTACAGGGAAGCTATAAGAGTGTGCAGCCTTGAAAAGGATCTTGAAATGATGGAAGACGGTGACGAAACCGAGATTGGAGAGCGTGGTATTAACCTCAGCGGAGGCCAGAAACAACGCGTGCAACTTGCTAGAGCTGTATATCAAGACACTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCTCAAACAGGATCATTTATTTTTAAGGAATGTATCTTGGGAGCTCTCAAAGATAAGACTGTTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTGATGCGTGACGGGAAAGTAGTGCAAAGTGGAAAATATGATGAACTTCTCAAAGCAGGGCTAGACTTTGGTGCACTTGTGGCAGCTCATGAATCCTCTATGGAAATTACAGAAACAAGTGATAAAACTGGTGATGATTCTATTCAATCTCCAAAACTAGCCCGCATCGCTTCAAAAGAAAAAGAAACTGCCGGCGAAAAACAGTCTTCTCAAGATCAACCTAAGTCTGATAAAACTGCAGCAAAGCTCGTTGAAGACGAGGAAAGAGAAACTGGTCGTGTGAACCTTACAGTATACAAACATTATTTCACTCAAGCATTTGGATGGTGGGGAATTGTATTAATGGTTGCAATGTCTGTGGCTTGGATGCTTTCATTTTTGGTTGGTGATTATTGGCTAGCAATTGCAACCGCAGAAGATTCTAGTGTTCCTTCGTTCACATTCATTATCGTCTATGCTATTATAGCCGTTGTTGCGTGCATAGTTGTGATGGCAAGAGCTTTCTTATTTACATATTGGGGTCTAAAGACATCTCAAAGCTTCTTCATTGGAATGCTTCAAAGCATCTTGCATGCACCTATGTCGTTCTTCGATACTACTCCTTCTGGCAGAATTTTGAGTCGAGTATCTACTGATATACTCTGGGTGGATATATCAATTCCAATGTTGGTAAACTTTGTAATGATAGCATACTTATCATTATTCAGTATCCTCATTGTCACATGCCAGAATTCTTGGGAGACTGTATTCCTCTTAATTCCACTGTTTTGGCTCAACAACTTGTATAGGAAATACTACCTTGCAACTTCTAGGGAATTAACTCGACTTGATTCAATCACAAAAGCTCCAGTGATTCATCACTTTTCAGAGACCATTTCTGGCGTTATGACAATCCGTAGCTTGAGAAAGCAGAATGCGTTTTCTCAGGAAAACATCGACAGGGTGAATGCAAGTCTAAGAATGGATTTTCATAACAATGGAGCAAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGCATTGCCACGGTTTTTATGATTTTCTTGCCAAGTGCTATCGTTAAGCCAGAATATGTTGGTATGTCTCTATCATATGGCCTGGCTTTGAGTGGTCTCTTGTCATTTACCATAACAATGACTTGCTCAGTTGAGAACAAAATGGTTTCAGTTGAGAGGATAAAACAGTTTACCAACCTCCCATCAGAAGCTCAATGGAAAATAGCTGACAAATCTCCTCCTCAGAATTGGCCTAGTCATGGCACTATAGAGTTAAATAATTTACAGGTTAGGTACAGGCCAAACACTCCTTTAGTTCTTAAGGGAATCTCTTTAACCATTGAAGGTGGAGAAAAAGTCGGTGTTGTTGGCCGTACAGGAAGTGGAAAATCAACACTCATTCAAGTGTTATTTAGATTAATTGAACCTTCAGCTGGGAAAATAATCATTGATGGTATCAACATTTCCAATATTGGCCTTCATGATTTAAGGTCACGTTTTGGAATTATTCCACAAGAGCCTGTACTCTTTCAAGGAACAATAAGAACCAACATTGACCCTCTTGGAATATATTCAGAAGAAGAAATTTGGAAGAGTCTCGAGCGCTGCCAATTGAAAGAAGTGGTGGCTGCAAAGCCTGAGAAACTCGAGGCTTTAGTGGTTGATGGTGGAGACAATTGGAGTGTCGGGCAACGACAGCTTCTATGCTTGGGAAGGATCATGCTAAAACGAAGCCAAATACTATTCATGGATGAAGCAACAGCATCAGTTGATTCACAAACTGATGCTGTTATACAAAAGATCATCAGAGAGGACTTTGCGGATCGTACAATTGTTAGCATCGCTCACAGAATACCAACAGTTATGGATTGTGACAGAGTTTTGGTCATAGATGCAGGTTTGGCAAAGGAATATGACAAGCCATCACGTTTGCTTGAAAGGCATTCACTTTTTGCAGCATTGGTTAAGGAGTATTCTAATAGATCAGCTTAA 4545 0.3844 MKPYQFSSHNNLSTMSSFSSSWLTSPSCTLIDSSSSTPNLILQWLTFLFLSPCPQRVLVSALDFLFLLSLLAFAAHKLYSRFNSRTNSNSSITKPLLQEKDSDYRITFWFKLPLLVTILLALTYTVLGILALTQTKASSWKQIESLFRLFQAIVNIVIVILLVHEKKFKASKHPLSVRIYWIGNFVISTLFAVSAIVRMITVGEQSLEISLRIDDIFSLVNLPLSLLFFVIAIKGSSGIHVIRISDVVVSTYRSVSTDRTLSPYACSSFLSKTVWYWMNPLINKGYKEPLKLEDVPSLPLDFRAEKMSELFQNNWPKPEENSKHPVGLTLFRCFWKQLAFTGFLAIIRLCVMYVGPLLIQSFVDFTSRKDSTASEGIVLILILFAAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMMQFHPIWLMPLQVAAALALMYSYVGISVLAALLGTSIVFLFTLYRTKSSNSFQFRIMTSRDSRMKATNELLNNMRVIKFQAWEEYLGNKIQKFRETEHGWIGKFLYYFAVNMGVLSTAPLAVTVLTFGTATFIGMPLDAGTVFTITSIIKILQEPVRTFPQALINISQATISLGRLDAFMSSTEMDVNAVQREENCDGDIAVEIKDGKFSWDDKDENVALTVDDLVIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTTSYVAQTSWIQNATIKENILFGLPLNIEKYREAIRVCSLEKDLEMMEDGDETEIGERGINLSGGQKQRVQLARAVYQDTDIYLLDDVFSAVDAQTGSFIFKECILGALKDKTVLLVTHQVDFLHNVDSIMVMRDGKVVQSGKYDELLKAGLDFGALVAAHESSMEITETSDKTGDDSIQSPKLARIASKEKETAGEKQSSQDQPKSDKTAAKLVEDEERETGRVNLTVYKHYFTQAFGWWGIVLMVAMSVAWMLSFLVGDYWLAIATAEDSSVPSFTFIIVYAIIAVVACIVVMARAFLFTYWGLKTSQSFFIGMLQSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLVNFVMIAYLSLFSILIVTCQNSWETVFLLIPLFWLNNLYRKYYLATSRELTRLDSITKAPVIHHFSETISGVMTIRSLRKQNAFSQENIDRVNASLRMDFHNNGANEWLGFRLDYMGVVFLCIATVFMIFLPSAIVKPEYVGMSLSYGLALSGLLSFTITMTCSVENKMVSVERIKQFTNLPSEAQWKIADKSPPQNWPSHGTIELNNLQVRYRPNTPLVLKGISLTIEGGEKVGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINISNIGLHDLRSRFGIIPQEPVLFQGTIRTNIDPLGIYSEEEIWKSLERCQLKEVVAAKPEKLEALVVDGGDNWSVGQRQLLCLGRIMLKRSQILFMDEATASVDSQTDAVIQKIIREDFADRTIVSIAHRIPTVMDCDRVLVIDAGLAKEYDKPSRLLERHSLFAALVKEYSNRSA* 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1968 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 339 619 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g1968 1514 Pfam ABC transporter 1291 1439 IPR003439 GO:0005524
Tpr5g1968 1514 Pfam ABC transporter 676 804 IPR003439 GO:0005524
Tpr5g1968 1514 MobiDBLite consensus disorder prediction 906 933 - -
Tpr5g1968 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 73 1514 - -
Tpr5g1968 1514 SMART AAA_5 680 861 IPR003593 -
Tpr5g1968 1514 SMART AAA_5 1300 1485 IPR003593 -
Tpr5g1968 1514 Gene3D - 1257 1508 IPR027417 -
Tpr5g1968 1514 SUPERFAMILY ABC transporter transmembrane region 329 632 IPR036640 GO:0005524|GO:0016021
Tpr5g1968 1514 Gene3D ABC transporter type 1, transmembrane domain 324 636 IPR036640 GO:0005524|GO:0016021
Tpr5g1968 1514 Gene3D ABC transporter type 1, transmembrane domain 922 1256 IPR036640 GO:0005524|GO:0016021
Tpr5g1968 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1507 IPR027417 -
Tpr5g1968 1514 CDD ABC_6TM_ABCC_D1 340 627 IPR044746 GO:0140359
Tpr5g1968 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 653 876 IPR003439 GO:0005524
Tpr5g1968 1514 CDD ABC_6TM_ABCC_D2 955 1249 IPR044726 GO:0140359
Tpr5g1968 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1237 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g1968 1514 SUPERFAMILY ABC transporter transmembrane region 956 1254 IPR036640 GO:0005524|GO:0016021
Tpr5g1968 1514 Coils Coil 1145 1165 - -
Tpr5g1968 1514 ProSitePatterns ABC transporters family signature. 778 792 IPR017871 GO:0005524
Tpr5g1968 1514 Gene3D - 648 879 IPR027417 -
Tpr5g1968 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 872 IPR027417 -
Tpr5g1968 1514 CDD ABCC_MRP_domain1 653 853 - -
Tpr5g1968 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1274 1508 IPR003439 GO:0005524
Tpr5g1968 1514 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 73 1514 - -
Tpr5g1968 1514 CDD ABCC_MRP_domain2 1272 1492 - -
Tpr5g1968 1514 Pfam ABC transporter transmembrane region 340 607 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g1968 1514 Pfam ABC transporter transmembrane region 959 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1968 Tpr-Chr5 39122102 39131212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1968 653 865 Calmodulin-binding Proteins AT2G36910 31.718 1.10e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1968 - K05665 gmx:100780167 2431.75