Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1960 ATGCAGAACGATGAAGGACAAATCACTGAGCTCTATATTCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACTGCTAAGGATCATGCTTCAGTTCAGATCAACATAGGTCATTTGGATGAGAGCGGTGTTTACAATGGCACCTTCTCCACTTTTGCTCTCTGCGGTTTCACTCGTGCTCAGGGAGATGCTGACAGTGGTATTGATCGCCTGTGGCAGAAAAAGAAAACCGAACTTAAGCAATAG 246 0.439 MQNDEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGTFSTFALCGFTRAQGDADSGIDRLWQKKKTELKQ* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1960 81 Gene3D - 1 80 IPR038579 -
Tpr5g1960 81 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Tpr5g1960 81 PIRSF RPS21e 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Tpr5g1960 81 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Tpr5g1960 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 - -
Tpr5g1960 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1960 Tpr-Chr5 39004950 39006427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1960 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 82.716 2.11e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1960 K02971 - gmx:100817753 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1960 5 39004950 39006427 Tpr5g1960 5 39004950 39006427 ECH