Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1957 ATGGCTAGGGCTTTTGAGTTTATCAAAGACATCACTGACCGTAAGGATCTATGGAAAGTAGCTGTCAAAGTGAAAGATAAATGGAGTGCTACCAAAGATGGGAAGGAGTACTTTGAAATGGTTGTGGTAGATGCAAAGGGAGATGATATCTTTGTCTTAGTTCCAAACGAGTTGAAACAGAAATTTGAAAATGAGATTCCTATCATTGTCAAAAACACTTACACTATGCAGAACTTTCAAGTATCAAAGAATGATGACCAATTCAAGCCATCACACCATGAATTCAAGTTGGGGTTCAATGGTGGTACATTAGTTAATGATGTCAATGTTCATGAAATTGCTGACCCTGTTACAAAGTTCAAATCTTTTGTGGATATTATTAATGGGAATTTTCGTGAAGATTACTTATATGATATCATTGGAATGGTAGATGAACTAGGTTTTCAACAACCTAATCATGGAAACAGGAAAGTTCAATCAAACTTTTTTCTTCGAGACTTAAGCAACAATCTGATTAATTGCACTCTGTGGGAAAACTATGCGATGAAATTCTTCAATGTACAGAACAAAGCAAATGATGGTCCAATTATTGTATTCATGAAATATGCCAAGATTAAAGCTCAAGGCAAATATGCCTTGAACATTTCAAACACCTGGAGTACTACGAAGCTTTTCATCAATGATGATGTTCCAGAGATCATTGAATTCAAAAAATGTTTAGCTGCTGGTATTGAAAATGGAACAATTAATGCTGTTGCTGAGACTCCATCTCAAATGAGATCTCAATCAAGTGGAGCAACACAATTTGTTCCATACACACCAGAGCAGAAATTCTATTACAATGCTGAAGTCATGCCTCTTAGCAAAATTGTCCAACTACCTCAGGATGCTAAATGTGTCACAGTCATTACCACAGTCAAGATTAAACCCAGTAGAGGTGGTTGGTACTATCTTACCTGTTTTAAATGCCCAAAACAGTGTTTTGGAGTAGCTCCTCCTTATAAATGTGGAGATGATCATGAAACTGAGACTGAGATCATAAGGTACAAACTGGATGTTGAGGTTGCTGCTGGTGATGTAAAGGCAACTTTTGTCTTTTGGGACCGTGAATGTGCTCAAATATTGGGAATTAGTGCCGCTGACCTTCGTGCTGAAATGCTTGCGCTTGGAATAAATGATCCTTTGAGTAATCCAGTAATAATGGATGACATTGCTGGCAAAACTTTGGATGTTAAGCTTAAGTGGCAAGCTAAATGGAAAACTGGGTCTGTCATTGGTATTCATGAAAGTCCTGAATTTGCCCTGGACATTCAATCTCAATTTCCAGCTGCCAATGTTCCTCAAGGAAAGTTGCAACTACCTGCAAAAGAAGCCAATTATGAGGACAATACTTCTGCTGAATCTTCTCAGAAATCTGACAACATTATTTTTCCAACGGTTTCTTTGTCTGCCTCTGATGAAGTGGATCCTGACATAATTGATATGAGTACACCACCAAAGCGCTTAGGAAAACAACTTCAATCTCCCGCTGAAATCGATGTTGGCTCTGTCATAGCATCAAAAGCTTCTTCCACAAAGATGCTCAAGAAACCTAAGAAGGAATAG 1605 0.3794 MARAFEFIKDITDRKDLWKVAVKVKDKWSATKDGKEYFEMVVVDAKGDDIFVLVPNELKQKFENEIPIIVKNTYTMQNFQVSKNDDQFKPSHHEFKLGFNGGTLVNDVNVHEIADPVTKFKSFVDIINGNFREDYLYDIIGMVDELGFQQPNHGNRKVQSNFFLRDLSNNLINCTLWENYAMKFFNVQNKANDGPIIVFMKYAKIKAQGKYALNISNTWSTTKLFINDDVPEIIEFKKCLAAGIENGTINAVAETPSQMRSQSSGATQFVPYTPEQKFYYNAEVMPLSKIVQLPQDAKCVTVITTVKIKPSRGGWYYLTCFKCPKQCFGVAPPYKCGDDHETETEIIRYKLDVEVAAGDVKATFVFWDRECAQILGISAADLRAEMLALGINDPLSNPVIMDDIAGKTLDVKLKWQAKWKTGSVIGIHESPEFALDIQSQFPAANVPQGKLQLPAKEANYEDNTSAESSQKSDNIIFPTVSLSASDEVDPDIIDMSTPPKRLGKQLQSPAEIDVGSVIASKASSTKMLKKPKKE* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1957 534 CDD RPA1_DBD_A_like 19 105 - -
Tpr5g1957 534 PANTHER REPLICATION FACTOR A 1, RFA1 66 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g1957 534 Gene3D - 113 250 IPR012340 -
Tpr5g1957 534 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 66 381 - -
Tpr5g1957 534 CDD RPA1_DBD_B_like 138 238 - -
Tpr5g1957 534 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Tpr5g1957 534 Gene3D - 4 107 IPR012340 -
Tpr5g1957 534 Gene3D - 275 429 IPR012340 -
Tpr5g1957 534 SUPERFAMILY Nucleic acid-binding proteins 5 105 IPR012340 -
Tpr5g1957 534 SUPERFAMILY Nucleic acid-binding proteins 295 416 IPR012340 -
Tpr5g1957 534 Pfam Domain of unknown function DUF223 39 136 IPR003871 -
Tpr5g1957 534 MobiDBLite consensus disorder prediction 488 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1957 Tpr-Chr5 38954599 38957606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1957 18 382 Core DNA Replication Machinery Family AT5G08020 21.149 2.40e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1957 - - mtr:MTR_2g450060 397.512