Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1934 ATGTTAACTACAAATCTTCATAGAACTTTTCTCTATCTCAAAAACCTAACTTTCCCACCAAAACCTTACCAATACCCATCACCATTTTCTCCACATTTTTGCACCAACACTTCAGATTCAACCACTTTTGCAGTCTCCTACCTCATAAACAATTTTGGGTTCTCCCCACAATCTGCATCCAAACTTTGCTCAACCTACCATCTTAGTTTTAAGACTGCCCAAAAACCTGATTCTGTTATCACATTTTTTAGAACCAATGGTTTCTCTAACTCCCAACTTCGCGATATCATTGCAAAGTTACCAGGGCTACTTTCCTGCAACCCCTCCATAAGGGTATTGCCAAAGTTTCAATTTTTACTCTCCAAAGCTGCTTCTAACTCTGACATTGTTAACCTTGTCAGTAAGAATCCCAGAATCTTGTCTACAAGCGTGGAGAATCATATAGTCCCAACCTATGAATTGCTTTATAGATTCTTGCAATCAGACATGGACATTATTGCTAGTGCAATACGATATCCAGCTTTACTTTGTGACCATCGTGTGCCACACAACATCACAATCTTGGTTGAGAATGGAGTTGCAGACTCGAGCATTGCAAAATTGCTTCGGAGGAATAGTTGGGTATTCCTGAAATGTGAGATGCTGAATTTAGTGGAGGAATTAAAGAATTTAGGGTTTAATCCTTCAAAAACAACTTTTGGTGTAGCGTTGGATGCCAAACTAACTGTAAACAAAACATTGTGGAAAGAAAAAGTCGATGCTTTTAAGAAGTGGGGGTGGTCTGATGAAGATGCTCATGAAGCATTTAGAAAGAAACCTCACTGTATGTTGGTATCCATTAATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAATTGGGTTGGGATGCGCTTGCCCTTGCAAAAGGACCGTCGGTTTTATCGAATAGTTTGGAAAAAAGTATCATTCCAAGGGCCTCAGTTGTGCAATTTCTGCTAAAGAAAGGTTTGCGAAAAAAGGATGCAAGCTTAACTTGTCCATTTGTAGTGTCTGAGCAGGTGTTTCTTGATACGTGTATAAAACGTTTTAAGGAGGAGACATCTTATCTATTAAAGCTTTATGAAGAAAAATTGAGTCTTGCACAAACCAGGGACAAAACCGGCATGTCATGA 1155 0.387 MLTTNLHRTFLYLKNLTFPPKPYQYPSPFSPHFCTNTSDSTTFAVSYLINNFGFSPQSASKLCSTYHLSFKTAQKPDSVITFFRTNGFSNSQLRDIIAKLPGLLSCNPSIRVLPKFQFLLSKAASNSDIVNLVSKNPRILSTSVENHIVPTYELLYRFLQSDMDIIASAIRYPALLCDHRVPHNITILVENGVADSSIAKLLRRNSWVFLKCEMLNLVEELKNLGFNPSKTTFGVALDAKLTVNKTLWKEKVDAFKKWGWSDEDAHEAFRKKPHCMLVSINKINLVMSFWVNQLGWDALALAKGPSVLSNSLEKSIIPRASVVQFLLKKGLRKKDASLTCPFVVSEQVFLDTCIKRFKEETSYLLKLYEEKLSLAQTRDKTGMS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1934 384 Gene3D Transcription termination factor 3, mitochondrial 161 366 IPR038538 -
Tpr5g1934 384 Pfam mTERF 81 226 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 Pfam mTERF 243 349 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 PANTHER CGI-12 PROTEIN-RELATED 23 376 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 376 - -
Tpr5g1934 384 SMART mt_12 199 227 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Tpr5g1934 384 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1934 Tpr-Chr5 38622009 38627039 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1934 mTERF 5.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1934 K15032 - gmx:102663414 368.622