Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1932 ATGGCTGCCATGGATATGCCCATTGCTGCTGTCTGGGATAAGCAGGAGTGGTCCACCAAGATTGTTGACAAGGAAATTGAGTCTGCTGATAAGGAGATGAGTCCAATGATGTTGTTGAGTCTGGGAACGGTCTCTACGACGACCGTTGCTGCTGTTGCGCTTGGTTATCATGATAATTGTGTAACTGATAGTCTATTTCCATATTGGATTCGACCACGAGACCGCAAACTATTGCAAACAAATGGGGAGGTGAATATCAATACAATTGTGGATGCTAATGGAAGTGGAAATTATACTAAAATAATGGATGCAATATCGGCATCACCTTATAAAAGCATGAAGCGATATGTGATATTGATAAAGAGAGGTGTGTACATGGAAAATATTGTGATTGATGAATCTAAGTGGAACCTCATGATTATTGGAGAGGGTATAGATACCACTATCATCTCTGCTGTTAGTGGAAAAAGGTTTATCGCGAAAGAAATTTCTTTTCGGAACACGGCTGGGCCAACAAATGGACAAGCAGTGGCACTAAAATCCGATTCAGATTTCTCAGTTTTTTATCGGTGTGAGATTTCCGGCTATCAGGATAGTTTATGCGCAAATACTAATCTTCAATTTTATAAAGAATGCATAATGAGCGGCACAGTGGACTTCATATTTGGATATGCAACCGCGGTGTTTCAAAACTGCACCATATTAGTCAAGAAAGGGTTGCCGGTACAAAAGAACACAATCACAGCTCAAGGAGGAAAATACCAGGGAAGACCAACTGGTTTCTCCTTTCAGTTTTGCAATATCGCTGCAGACTCCGATCTTTTACCAGCAATTAAATCAACCTCGACATTCCTTGGTAGACCGTGGCATCCATATTCAAAAGTAATCTTCATGCAAACTTACATAAGTGATGTTTTGAATCAAGGAGGGTGGTTAGAGTGGAATGGTTCACAGTATTTGGATACATTATATTATGCAGAGTACAATAACTTTGGACCAGGAGCAGACCTACGAAACCGTGTGAAATGGTCTGGCTACCATATGTTGAATGATTCTAGTCAAGCTCGTATCTTCACCGTCGCCCAATTCATTTCGGGGGATCAATGGTTACCTTCTACGGGTGTACCGTTTATCAGTGGATTAGGGGATCAAAACATTATATAG 1164 0.4089 MAAMDMPIAAVWDKQEWSTKIVDKEIESADKEMSPMMLLSLGTVSTTTVAAVALGYHDNCVTDSLFPYWIRPRDRKLLQTNGEVNINTIVDANGSGNYTKIMDAISASPYKSMKRYVILIKRGVYMENIVIDESKWNLMIIGEGIDTTIISAVSGKRFIAKEISFRNTAGPTNGQAVALKSDSDFSVFYRCEISGYQDSLCANTNLQFYKECIMSGTVDFIFGYATAVFQNCTILVKKGLPVQKNTITAQGGKYQGRPTGFSFQFCNIAADSDLLPAIKSTSTFLGRPWHPYSKVIFMQTYISDVLNQGGWLEWNGSQYLDTLYYAEYNNFGPGADLRNRVKWSGYHMLNDSSQARIFTVAQFISGDQWLPSTGVPFISGLGDQNII* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1932 387 SUPERFAMILY Pectin lyase-like 86 380 IPR011050 -
Tpr5g1932 387 Gene3D - 82 381 IPR012334 -
Tpr5g1932 387 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 57 381 - -
Tpr5g1932 387 Pfam Pectinesterase 88 367 IPR000070 GO:0030599|GO:0042545
Tpr5g1932 387 PANTHER PECTINESTERASE 57 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1932 Tpr-Chr5 38609306 38617144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1932 64 381 Carbohydrate Esterase AT3G43270 57.015 1.33e-139 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1932 K01051 - gmx:100798620 432.18