Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1931 ATGATGATACACCAAACCTTATCATCTTCGTCTTCATCCTTTTCTCCATTTTTTCCACTTCAAATCAAATCTAAATCTTTTCAAATGTTCAATACACCACCACCTTATTTATATCTTAACAAACACTTAACTTTCCCTCTTATCATCGATAACTATCCATCACCATGTTGTTCTCTGCATTTCTGCACCAACACTTCTGATTCAACATCTTTTGAAGTTTCCTACCTCATCAACAATTTCGACTTCTCACCACAATTTGCTTCCAAACTCTCCTCAACTTACAAGGTTCGTTTCAACACTTCCCAAAACCCTGATTTAGTTCTCAACTTCTTTAGAAACAATGGTTTCTCAGAAACCCAATTACGTTATATCATTTCCAAGGCACCAAGGTTACTTTCCTGTGACCCCTCCAAAAGGGTATTGCCAAAGTTTCAATTTTTACTATCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTCAGTAAGAACCCTATGGTCCTGTCTCCAAGCTTGGAGAATCATATAATCCCAACCTATGAATTGCTTTATAGATTTTTGCAATCAGACAAGGACATTATTGCTGGTGTAGTTCATAATCCAGCATTACTTAGTGACCATCTTGTGCCACAAAACATCACAATGTTGATTAAGAATGGAGTTACAGATTCAAGCATTGCAAGATTGTTTCGGACGCGGTCACGATCATTGAATACGAATACACGTTGCATGCTGAAGTTGGTGGAGGAATTGAAGGATTTGGGTTTTAATCCTTCAAAAATAACTTTTGGTATAGCATTGGAAGCCAAACTAACTGTAAACAAAACATTGTGGAAAGAAAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGATGATGTGACAGAAGCATTTAGAAGGCAGCCTCATTGTATGTTGGTATCTATTGATAAAATTAATTTAGTGATGAGCTTTTGGGTCGATCAGTTGGGTTGGGATGTGCTTGCCCTTGCAAAAGGACCGTCGGTTTTTTCAAATAGTTTGGAAAAAAGGATCATTCCAAGGGCCTCAGTTGTGCAATTTCTGTTGAAGAAAGGTTTGCGAAAAAAGGATGCAAGCTTAATTTATCCATTTGTAATGTCTGAGAAGTTGTTTCTTGACGCGTTTATTATGCGTTTTAAGGAGGAGTCATCTTATCTATTAAAGATTTATGAAGAAAAACTGAGTCTTGCACAAACAAGGGACAAAACCGGCATGTAA 1242 0.372 MMIHQTLSSSSSSFSPFFPLQIKSKSFQMFNTPPPYLYLNKHLTFPLIIDNYPSPCCSLHFCTNTSDSTSFEVSYLINNFDFSPQFASKLSSTYKVRFNTSQNPDLVLNFFRNNGFSETQLRYIISKAPRLLSCDPSKRVLPKFQFLLSKGASNSDIVNLVSKNPMVLSPSLENHIIPTYELLYRFLQSDKDIIAGVVHNPALLSDHLVPQNITMLIKNGVTDSSIARLFRTRSRSLNTNTRCMLKLVEELKDLGFNPSKITFGIALEAKLTVNKTLWKEKVDAFKKWGWSDDDVTEAFRRQPHCMLVSIDKINLVMSFWVDQLGWDVLALAKGPSVFSNSLEKRIIPRASVVQFLLKKGLRKKDASLIYPFVMSEKLFLDAFIMRFKEESSYLLKIYEEKLSLAQTRDKTGM* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1931 413 Pfam mTERF 273 379 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 Pfam mTERF 108 260 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 50 406 - -
Tpr5g1931 413 Gene3D Transcription termination factor 3, mitochondrial 170 394 IPR038538 -
Tpr5g1931 413 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 SMART mt_12 227 257 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 SMART mt_12 328 362 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Tpr5g1931 413 PANTHER CGI-12 PROTEIN-RELATED 50 406 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1931 Tpr-Chr5 38594827 38599006 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1931 mTERF 3.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1931 K15032 - gmx:102663414 360.918