Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1928 ATGATTCCCAAAGCACCATGGCTACTTTGCTGCAACCCCTCCTTAAGGCTCATCCCAAAGTTTCAATTTTTCCTCTCCAAAGGTGCTTCTAAATCTGACATTGTTAACCTTGTCAGTAAGCACCCTATGGTCCTATCTCCAAGCTTGGAGAATCATATAATCCCAACCTATGAATTGTTTTATAGATTTGTGCAATCAGACAAGGACATTATTGCTGGTGTAGTTCATAATCCATCTTTACTTAGTGACCATCTTGTGTCACAAAACATCACAATGCTGATTAATAATGGAGTTACAGATTCAAGCATTGCAAGATTGTTTCGGACGCCATCTCGATCATTGAATACCAATAAACGTTTGATGATGAAGTTAGTGGAGGAAATGAAGGATTTGGGTTTAATCCTTCAAAAACAACCTTTGATGGGTTGGGATGTGCTTGCATTTGCAAAAGGACCATCAACTTTTTCAATTAGTTTGGAAAAAAGGATCATTCCAAGGGCCTCGGTTGTGCAATTTCTGCTGAAGAAAGGTTTGCGAAAAAAGGATGCAAGCTTAACTTATCCATTTAAACTGTATGATAAGATGTTTCTTGATAGGTTTATAATGCGTTTTAAGGAGCAGTCATCTTATCTATTAAAGCTTTATGAAGAAAAACTGACTCTTGCACACACCAGGGAGGGCAAAACTGACATGTCATGA 699 0.3805 MIPKAPWLLCCNPSLRLIPKFQFFLSKGASKSDIVNLVSKHPMVLSPSLENHIIPTYELFYRFVQSDKDIIAGVVHNPSLLSDHLVSQNITMLINNGVTDSSIARLFRTPSRSLNTNKRLMMKLVEEMKDLGLILQKQPLMGWDVLAFAKGPSTFSISLEKRIIPRASVVQFLLKKGLRKKDASLTYPFKLYDKMFLDRFIMRFKEQSSYLLKLYEEKLTLAHTREGKTDMS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1928 232 Gene3D Transcription termination factor 3, mitochondrial 1 211 IPR038538 -
Tpr5g1928 232 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 134 - -
Tpr5g1928 232 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 141 224 - -
Tpr5g1928 232 SMART mt_12 145 179 IPR003690 GO:0003690|GO:0006355
Tpr5g1928 232 SMART mt_12 35 66 IPR003690 GO:0003690|GO:0006355
Tpr5g1928 232 SMART mt_12 1 30 IPR003690 GO:0003690|GO:0006355
Tpr5g1928 232 Pfam mTERF 4 133 IPR003690 GO:0003690|GO:0006355
Tpr5g1928 232 PANTHER CGI-12 PROTEIN-RELATED 1 134 IPR003690 GO:0003690|GO:0006355
Tpr5g1928 232 PANTHER CGI-12 PROTEIN-RELATED 141 224 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1928 Tpr-Chr5 38565565 38566373 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1928 mTERF 6.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1928 K15032 - gmx:102667698 167.162