Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1925 ATGACACCTTTTACAATGTTCACTTCACATCGCCATAGAACTTTTCTCTACCTCAACAAAGCCTTAAACCCTAACCCTCTTTTCCCATCACTATTTTCTCTGCATTTCTGCACCAATACTTCAGATTCAACTTCTTTTGCAATCTCCTACCTCATCAACAATTTTGGGTTTTCCCCACAATGTGCTTCCAAACTTTGTTCCACTTACAATGTTCGTTTCAAGACAACCAAACAACCTGATTATGTTCTCAACTTCTTTAGAAACCAAGGTTTCATTGATTCCCAAGTTGGCAATATGATTTCCAAAGCACCATGGTTACTTACTTGCAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTACTATCCAAAGGTGTTTCAACCTCTGACATTGTTACCCTAATTACTAAGAGACCCGTCATCCTTTCTCCGAGTTTGAAGAATCATATAGTCCCGACTTATGAATTGTTGCATAGATTCTTCAAATCTGACAAGGACATTATTGCTTGTGCAATTGGCAATCCAGGTATACTTGTTAACCATTTTGTGCCACAGAACATTAAATTGTTGATTGAGAATGGAGTGGTAGACTCGAACATTTCAAACATGCTTCGGGTACAGAGCACTGTACTAAGCACAAATGACAATGATTTTTTGAAAGTGGTGGAGGAATTGAAGGATTTGGGGTTTAATCCTTCACAGTCACTTTTTTATGTAGCACTGATTGCCAAAATAAAGGTAACAAAAACTAGGTGGGAAGAGAAAGTTGCTGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGCTCTTGAAGCGTTTAAAAAGCAGCCTCATTGTATGTTAACATCTGTTGATAAAATTAATTCAGTGATGAGCTTTTGGGTTAATCAGTTAGGTTGGGATGCTAGGGCCATTGTCAAACTACCAAGGGTTTTTGGGTCTAGTCTAGAGAGAAGGATCATACCAAGGGCCGCAGTTCTGCAATATATTCTGAAAAAAGGTTTCCTGAAAAAGAAAGCAAGCTTAACTACTCCATTTATAGTCACTGATAAGTCGTTCCTTGAAAGATATATAAACCGTTATAAGGAAGAGTCATCTTATCTATTAAAGCTTTATGAAGAAAAACTGGATCTTGCACACGCCAGGGACGAAACTGATACTATGTCATGA 1173 0.3811 MTPFTMFTSHRHRTFLYLNKALNPNPLFPSLFSLHFCTNTSDSTSFAISYLINNFGFSPQCASKLCSTYNVRFKTTKQPDYVLNFFRNQGFIDSQVGNMISKAPWLLTCNPSKRVLPKFQFLLSKGVSTSDIVTLITKRPVILSPSLKNHIVPTYELLHRFFKSDKDIIACAIGNPGILVNHFVPQNIKLLIENGVVDSNISNMLRVQSTVLSTNDNDFLKVVEELKDLGFNPSQSLFYVALIAKIKVTKTRWEEKVAAFKKWGWSDEDALEAFKKQPHCMLTSVDKINSVMSFWVNQLGWDARAIVKLPRVFGSSLERRIIPRAAVLQYILKKGFLKKKASLTTPFIVTDKSFLERYINRYKEESSYLLKLYEEKLDLAHARDETDTMS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1925 390 Gene3D Transcription termination factor 3, mitochondrial 64 181 IPR038538 -
Tpr5g1925 390 Gene3D Transcription termination factor 3, mitochondrial 182 372 IPR038538 -
Tpr5g1925 390 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 SMART mt_12 133 165 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 Pfam mTERF 83 232 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 Pfam mTERF 248 355 IPR003690 GO:0003690|GO:0006355
Tpr5g1925 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 382 - -
Tpr5g1925 390 PANTHER CGI-12 PROTEIN-RELATED 28 382 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1925 Tpr-Chr5 38553299 38557540 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1925 mTERF 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1925 K15032 - gmx:102663414 382.489