Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1924 ATGTTGAAGTTCAATTCATGGCGCCACAAAACCCTAATCTATTATCACAACCCCTTAGCATTTTCACAATCCCCAAACCCTAACCCTCTTTTCCACCATTACCCATCACTATTTTCCCTGCATTTCTGCACCAATACTTCCGATTCAACTTCTTTTGCAGTTTCCTACCTCATCAACAATATTGGGTTGTCCCCAAAATCTGCTCCCAAACTTTGCAAAACTTACAATGTCCGTTTCAAGACTGCCCAAAACCCTGATTTAGTTCTTAATTTCTTTAGAAACCATGGTTTCTCAGACACACAATTACGTAATATCATTGCAAAATCACCATGGCTACTTTCCTGCAACCCCTCCAAAAGGGTATTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAACTCTGACATTATTAACCTTGTCAGTAAGAACCCTACGGTCCTGTCTCCAAGTTTGGAGAATCATATAATCCCAACCTATGAATTGCTTTATAGATTTTTGCAATCAGACAAGGACATTATTGCTGCTGCAGTTCAAAATCCAGCTTTACTTATTCACCATTTTGTGTCACATAACATTGGAGTGATGATTGAGAATGGAGTGACAGATTCAAACATTACAAGAGTTCTTCGGATACAGAACATCGCGGTATGCAGAAGTGGCATTTTGAATGTGGTGGAGGAATTGAAGGATTTGGGGTTTAATCCTTCACAAACAATTTTTTATGTGGCACTGATTGCCAAAAGAACTGTAACCAAAACCCGGTGGGAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTAAAAGAAGCATTTAGAAAGCATCCTCACTGTATGTTATTATCCATTGATAAAATTAATTCAGTGATGAGCTTTTGGGTCAATCAGTTAGGTTGGGATGCTATGGCCATTGCCAAAACGCCAAGGGTTTTCGGGTCCAGTCTGGAAAAAAGGATCATACCAAGAGCCTCGGTTGTGCAATATCTTTTGAAGAAAGGTTTGCAAAAAAAGGAAGCAAGTTTAACTTCTCCATTTATAGTCACTGCTAAGTCGTTCCTTGAAAGATATATAAACCGTTATAAGGAAGAGTCATCTTATCTATTAAAGCTTTATGAAGAAAAACTGGATCTTGCACACGCCAGGGACGAAACTGATACAATGTCATGA 1185 0.3882 MLKFNSWRHKTLIYYHNPLAFSQSPNPNPLFHHYPSLFSLHFCTNTSDSTSFAVSYLINNIGLSPKSAPKLCKTYNVRFKTAQNPDLVLNFFRNHGFSDTQLRNIIAKSPWLLSCNPSKRVLPKFQFLLSKGASNSDIINLVSKNPTVLSPSLENHIIPTYELLYRFLQSDKDIIAAAVQNPALLIHHFVSHNIGVMIENGVTDSNITRVLRIQNIAVCRSGILNVVEELKDLGFNPSQTIFYVALIAKRTVTKTRWEEKVDAFKKWGWSDEDVKEAFRKHPHCMLLSIDKINSVMSFWVNQLGWDAMAIAKTPRVFGSSLEKRIIPRASVVQYLLKKGLQKKEASLTSPFIVTAKSFLERYINRYKEESSYLLKLYEEKLDLAHARDETDTMS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1924 394 PANTHER CGI-12 PROTEIN-RELATED 19 386 IPR003690 GO:0003690|GO:0006355
Tpr5g1924 394 Gene3D Transcription termination factor 3, mitochondrial 152 376 IPR038538 -
Tpr5g1924 394 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 386 - -
Tpr5g1924 394 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Tpr5g1924 394 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Tpr5g1924 394 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Tpr5g1924 394 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Tpr5g1924 394 Pfam mTERF 89 236 IPR003690 GO:0003690|GO:0006355
Tpr5g1924 394 Pfam mTERF 254 358 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1924 Tpr-Chr5 38547329 38551165 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1924 mTERF 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1924 K15032 - gmx:102663414 394.815