Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1922 ATGTTCAAATTCAATTCATGGCGCCACAAAACCCTAATCTATTATCTTAAGGAATTAACATTACAATCCCCACACCCTAACCCTCTTTTGTTTTCTCTTCATTTCTGCACCAACACTTCCGATTCAACCTCATTTGCTGCTTCCTATCTCATCAACAATTTTGGGTTTTCCCCAAAATCTGCTCCCAAACTTTGCTCCACTTACAATGTTCGTTTCAAAACTGCTCAAAAACCTGATTCAGTTCTCAATTTCTTTAGAAACCATGGTTTCTCAGACACCCAATTACGTAATATCATTGCAAAATCACCATGGCTACTTTCCTGCAATCCCTCCAAAAGGGTTTTGCCAAAGTTTGAATTTTTCCTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTCAGTAAGTACCCTATGGTCTTGTCTCCAAGCTTGGAGAATCATATAGTCCCAACCTATGAGTTGTTGTATAAATTCTTGAAATCTGACAAGGACGTTATTGCTTGTGCATTTGGCAATCCAACTTTACTTACTCACCATTTTGCGCCACATAACATTAGAGTGATGATTGAGAATGGAGTGACCGATTTAAACATTACAAGAGTGATTCGGAGACAAAGCAGCATACTATGCAGAAGTGACATTTTGATGGAGGTGGAGGAATTGAAGGGTTTGGGGTTTAATCTTTCACAATCATTTTTTTCTGAAGCACTGATTGCCAAAAGAAAAATAACCAAAACCAGATGGGAAGAGAAAGTTGATGCCATTAAGAAATGGGGTTGGTCTGATGCAGATGTTTTAGAAGCATTTAAAAAGCAGCCTCATATTATGTTAACATCCATTGATAAAATTAATTCAGTGATGAGCTTTTGGGTCAATCAGTTAGGTTGGGATGCTAGGGCCATTGTCAAACTACCAAGGGTTTTTGGGTCCTGTCTAGAGAGAAGGATCATACCAAGGGCCGCAGTTCTGCAATATATTCTGAAAAAAGGTTTACTGAATAAGAAAGCAAGCTTAACTACTCCATTTGTAGTCAGCGATAAGTTGTTCCTTGAAAGGTATATAAACCGTTATAAGGTGCAGTCATCTTATCTATTAAAGCTTTATGAAGAAAAACTGAATCTTGCACATGCCAGGGACGAAACTGATACTATGTCATGA 1164 0.3814 MFKFNSWRHKTLIYYLKELTLQSPHPNPLLFSLHFCTNTSDSTSFAASYLINNFGFSPKSAPKLCSTYNVRFKTAQKPDSVLNFFRNHGFSDTQLRNIIAKSPWLLSCNPSKRVLPKFEFFLSKGASNSDIVNLVSKYPMVLSPSLENHIVPTYELLYKFLKSDKDVIACAFGNPTLLTHHFAPHNIRVMIENGVTDLNITRVIRRQSSILCRSDILMEVEELKGLGFNLSQSFFSEALIAKRKITKTRWEEKVDAIKKWGWSDADVLEAFKKQPHIMLTSIDKINSVMSFWVNQLGWDARAIVKLPRVFGSCLERRIIPRAAVLQYILKKGLLNKKASLTTPFVVSDKLFLERYINRYKVQSSYLLKLYEEKLNLAHARDETDTMS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1922 387 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 SMART mt_12 201 229 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 379 - -
Tpr5g1922 387 Gene3D Transcription termination factor 3, mitochondrial 183 365 IPR038538 -
Tpr5g1922 387 PANTHER CGI-12 PROTEIN-RELATED 24 379 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 Pfam mTERF 249 352 IPR003690 GO:0003690|GO:0006355
Tpr5g1922 387 Pfam mTERF 82 285 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1922 Tpr-Chr5 38531420 38535692 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1922 mTERF 6.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1922 K15032 - gmx:102663414 385.571