Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1921 ATGTTCAAGTTCAATTCATTTTGCCACAAAACCCTAATCTATTATCTCAACGGATTAACATTACTATCCCCAAACCCTAACCCTCTTTTGTTTTCTCTTCATTTCTGCACCAACACTTCCGATTCAACCTCATTTGCAGTTTCCTACCTCATCAACAATTTTGGGTTTTCTCCAAAATCTGCTCCCAAACTTTGCTCCACTTACAATGTTCGTTTCAAGACTGCTCAAAAACCTGATTCAGTTCTCAATTTCTTTAGAAACCATGGTTTCTCAGACACCCAATTACGTCATATCATTGCAAAATCACCATGGCTACTTTCCTGCAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTACATCTGACAATGTTAACATTGTCAGTAAGAACCCTGCTGTCCTGTCTGCAAGCCTCGAGAATCGTATAGTCCCAGCCTATGAATTGGTTTATAGATTTTTGCAATCAGACAAGGACACTATTGCTTTGTTGAAGTACAATCCAACTATCTTTGGAACAAGTTATGTGGTAGATAACATCAAAGTGCTTACTGAGAGTGGAGTAACTGACTCAAATATTGCAAGATCGCTTCGGACCTGGATTAAGTTATTCTACAGGACGGACTTGCATGAGTTGGTGGAGGAATTGAAGGATTTGGGGTTTGATCCTTCGCGGTCAATTTTCACAATAGCATTGATCGCCAAAACATCAATAACCAAAACGTTGTGGAAAGAAAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTAATGAAGATGCTCTTAAAGCATTTAGAAAGCAACCTCATTGTATGTTAACATCCATTGATAAAATTAATTTAGTGATGAGCTATTGGGTCAATCAGTTGGGTTGGGATGCTCTTGCCATTGCCAAAACGCCAAGGGTTTTTGGGGCCAGTCTGGAAAAAACGATCATACCAAGAGCCTCGGTTGTGCAATATCTTTTGAAGAAAGGTTTGCTAAATAAAGAAGCAAGTTTAACTTCTCCATTTGTAGTCACGGAGAAGATTTTCCTTGACATGTATATAAATCGTTTTAAGGAGGAGTCTTCGTATCTATTAAAGCTCTATGAAGAAAAACTGAATCTTGCACAAACCACGGAAGAAACTGGCATGATATGA 1161 0.3867 MFKFNSFCHKTLIYYLNGLTLLSPNPNPLLFSLHFCTNTSDSTSFAVSYLINNFGFSPKSAPKLCSTYNVRFKTAQKPDSVLNFFRNHGFSDTQLRHIIAKSPWLLSCNPSKRVLPKFQFLLSKGASTSDNVNIVSKNPAVLSASLENRIVPAYELVYRFLQSDKDTIALLKYNPTIFGTSYVVDNIKVLTESGVTDSNIARSLRTWIKLFYRTDLHELVEELKDLGFDPSRSIFTIALIAKTSITKTLWKEKVDVFKKWGWSNEDALKAFRKQPHCMLTSIDKINLVMSYWVNQLGWDALAIAKTPRVFGASLEKTIIPRASVVQYLLKKGLLNKEASLTSPFVVTEKIFLDMYINRFKEESSYLLKLYEEKLNLAQTTEETGMI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1921 386 Gene3D Transcription termination factor 3, mitochondrial 158 368 IPR038538 -
Tpr5g1921 386 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 PANTHER CGI-12 PROTEIN-RELATED 27 378 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 Pfam mTERF 248 351 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 Pfam mTERF 82 229 IPR003690 GO:0003690|GO:0006355
Tpr5g1921 386 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 27 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1921 Tpr-Chr5 38527275 38529554 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1921 mTERF 3.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1921 K15032 - gmx:102663414 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1921 5 38527275 38529554 Tpr5g1921 5 38527275 38529554 ECH